| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0181 |
|---|
| Symbol | |
|---|
| ID | 4689070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 194426 |
|---|
| End bp | 195370 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639833174 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_980427 |
|---|
| Protein GI | 121603098 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.835722 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTGA ACTTTGATCC CCAAACCTTG CGCGCTTTCG TGGCCGTGGC GCGGCATGGC
AATGTCTCGC GGGCGGCTGA GCGCCTGCAC CTGAGCCAGC CTGCGGTCAG CCTGCAGCTC
AAGGGGCTGG CCGCCAACAC CGGATTGACG CTGTTCACCC GCACGCCGCA GGGGCTGACG
CTCACGCGCG ACGGCGCGGC GCTGCTGCCG CAGGCCGAAA AAGCCCTGGC GGCGCTGGCC
GATTTTGCGC AGGCGGCGCT GGGGCTGCAC AGCAGCGTGC GCGGCACGCT GCGCATCGGC
ACCATTCTGG ACCCCGAGTT CACCCGGCTC GGGGCGTTCC TGAAGGAGCT GGTGGAGGCC
GCGCCGCAGA TCGACACCGA GCTGCGCCAG GGCATGAGCG GCAACGTGCT GGCGCAGATC
GTCCGGGGCG ACCTGGATGT GGGCTTTTAC CTCGACCGGC CAGAAAAAAG TGAAGCAAAT
CAGGGGTTTG TGCAGGATGG ACGGGCGCAG GCTGCTATTG ATTTTGAAGT CATGGAGCTG
ACGCGTTTTA CGTACCGCGT CATCGCGCCC GCCGGCTGGG GCCAGCAGGT GCAGGGCCGC
GACTGGAAGG CGCTGGCCGC GCTGCCCTGG CTGGCCACGC CGCCGGCCAG CGTTCACCAT
CGGCTGCTGT CGCGGGTGTT TGGCGCGGCC TCGCTGACCG GCCTGGAGCC GCGCCGCGTG
GCGCTGGTGG ACCAGGAAGC GTCGATGCTC GACCTGGTCA AATCCGGCGT CGGCCTGAGC
CTGGCGCGCG ACTCCATCGC GATCCGCGAA AGCCAGGCGC ATGGCCTGGT GGTGGCGGAC
CGGGTCAGCC TGGACTGCGT GCTGAGCTTC ATCTGCCTGA AGGCGCGGGT GGCCGAACCC
GTGGTGGCCA GCGCCTGGGG CGCGCTGGCG CAGGCCTGGC GATGA
|
|---|
| Protein sequence | MSLNFDPQTL RAFVAVARHG NVSRAAERLH LSQPAVSLQL KGLAANTGLT LFTRTPQGLT
LTRDGAALLP QAEKALAALA DFAQAALGLH SSVRGTLRIG TILDPEFTRL GAFLKELVEA
APQIDTELRQ GMSGNVLAQI VRGDLDVGFY LDRPEKSEAN QGFVQDGRAQ AAIDFEVMEL
TRFTYRVIAP AGWGQQVQGR DWKALAALPW LATPPASVHH RLLSRVFGAA SLTGLEPRRV
ALVDQEASML DLVKSGVGLS LARDSIAIRE SQAHGLVVAD RVSLDCVLSF ICLKARVAEP
VVASAWGALA QAWR
|
|---|
| |