| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4040 |
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| Symbol | |
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| ID | 5106337 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 4421145 |
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| End bp | 4421795 |
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| Gene Length | 651 bp |
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| Protein Length | 216 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640505304 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_001189519 |
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| Protein GI | 146309054 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.56786 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGCGC CCACTATGCC CGAACGATTC CAACAAGAAC GCATCATCGT GGCCGACGAT
CACCCGGTGT TTCGCGACGG TCTCAGCCGT ATCGCGCAGC GCGTGTTTGC GCAGGCGCAG
GTGTGCGAGG CGGGGGATAT GGATGAGGTC CTGAGCCTGG CCAATGCCGG GGCGGCGCCT
TGCCTGTTCA TCCTCGATCT GCTGTTCCCC GGACAATCGC CGCAGGCCAT TGGCGCGCTG
CGCCAGCACT TCCCCTGCAG CTCGATCGTG ATCGTCTCGA TGGTGGATAA CCGCGAGCTG
ATCGACGAGG TGATGGCGGC GGGCGCCGAT GGTTTCATCG GCAAGGCGAC GCCTCCCGAT
GACATCGCCG AGGCGCTAGT GGCGGTGCGG GCGGGCGATT TCGTGATGAC CCTGGGCCCG
CCCGGCCTAC CGACCTTCGC CGAAGACAGA CACCTGCTGG AGCAACTGAC GCCGCGCCAG
CAGGAGGTGT TGCGGCTGGT GGTGCGCGGC CTGTCGAACA AGGAAATCGC CCGCCAGCTG
GATATCTCGC CCTTCACCGT GCGTATCCAC GTGTCCTCGT TGCTGCGCAC GCTGGATGTC
GGGACCCGCG CAGCAGCCGC CGCCAAGGGC GCCAAGGCCG GCCTGAGCTA G
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| Protein sequence | MEAPTMPERF QQERIIVADD HPVFRDGLSR IAQRVFAQAQ VCEAGDMDEV LSLANAGAAP
CLFILDLLFP GQSPQAIGAL RQHFPCSSIV IVSMVDNREL IDEVMAAGAD GFIGKATPPD
DIAEALVAVR AGDFVMTLGP PGLPTFAEDR HLLEQLTPRQ QEVLRLVVRG LSNKEIARQL
DISPFTVRIH VSSLLRTLDV GTRAAAAAKG AKAGLS
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