Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3758 |
Symbol | |
ID | 5105753 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 4142381 |
End bp | 4143535 |
Gene Length | 1155 bp |
Protein Length | 384 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640505013 |
Product | CRISPR-associated Cse4 family protein |
Protein accession | YP_001189238 |
Protein GI | 146308773 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01869] CRISPR system CASCADE complex protein CasC/Cse4 |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.398681 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTCTGT TCGTCGAGTT TCACCTGATC CAAAACTTCG CCCCATCCAA CCTCAACCGT GACGACACCG GCGCACCCAA GGATGCCCTG TTCGGCGGTC ATCGCCGCGC GCGGGTCAGC AGCCAGTGCT TCAAGCGCGC CATCCGTCTG GCTGCCCAGG AGCATGAGCT GGTCGCCCCG GAGTTTCGCG GCGTGCGTAC CAAGAAACTG AAGACACTGT TGCTGGAGCG CTTGGCTGGG CGTGACCCGC TCGAAGCCGA GGGCAAGATC GAAGTGGCGC TGGCTGCTGC CGGCCTCAAG CTCAAAGACG ATGGCAAGAC CGAATACCTG CTGTTTCTCG GCGAGGCAGA GATCGCCGGC TTCGCCACGC TGATCGAGCA ACACTGGGAC GAGCTGGCCG GTGCCCCGGC AGGCGGCGAG AAGAAGGGCG AGAAGAAGGG CAAGAAGGAA GCCAAGGCCA GCGCACCGGC CGAGGTAGTG AAAAAGGCCA AGGCCCTGCT CGATGGTGGC AAGGCAGTGG ATGTGGCCTT GTTCGGCCGC ATGCTCGCCG ATATGCCGGA GGTCAACCAG GACGCCGCCT GCCAGGTGGC CCATGCCATC AGCACGCACC GCGTGGAGCG TGAGTTCGAC TACTTCACCG CCGTCGATGA CAAGGGCGGG CCCGACGAAA CCGGCGCCGG CATGATCGGC CAGGTGGAGT TCAATTCCGC GACGCTGTAC CGCTACGCGG TAGTCGATGC CGGCAAGCTG CTCGGCAACC TGCAGCAGGA TCGCGAGCTG ACCCTTTCCG CCCTGGAGGC CTTCACTCAG GCCATGGTGC GCGCCATCCC GACGGGCAAG CAGAACACCT TCGCCGCGCA CAACCTGCCA AGTTTCGTCG GCGTCTGCCT GCGCCATGCC GGTCCGCTGA ACCTGGCCAA CGCCTTCGAG AAGCCTATCG CCGCACGTCA GGATGCCGCG CTGAGCAGCC TGTCGGTCAC AGAACTGGCC AAGCACGAGG GCAAGCTGGC GGCGGTCTAT GCCGATGCCA GTGATCAGTG GGCCTACCTC GATCTGAGCG AGGCCTGGCC GCAGCAGAAG GGCTTTGCTG TGCAGAACCT GGGCGAATTG GCGAGCTGGG TACGTATGCA GGTCGCCGCG CAACTGGAGG GCTGA
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Protein sequence | MSLFVEFHLI QNFAPSNLNR DDTGAPKDAL FGGHRRARVS SQCFKRAIRL AAQEHELVAP EFRGVRTKKL KTLLLERLAG RDPLEAEGKI EVALAAAGLK LKDDGKTEYL LFLGEAEIAG FATLIEQHWD ELAGAPAGGE KKGEKKGKKE AKASAPAEVV KKAKALLDGG KAVDVALFGR MLADMPEVNQ DAACQVAHAI STHRVEREFD YFTAVDDKGG PDETGAGMIG QVEFNSATLY RYAVVDAGKL LGNLQQDREL TLSALEAFTQ AMVRAIPTGK QNTFAAHNLP SFVGVCLRHA GPLNLANAFE KPIAARQDAA LSSLSVTELA KHEGKLAAVY ADASDQWAYL DLSEAWPQQK GFAVQNLGEL ASWVRMQVAA QLEG
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