| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3563 |
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| Symbol | |
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| ID | 5106110 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3929551 |
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| End bp | 3930489 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640504816 |
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| Product | cyclic nucleotide-binding protein |
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| Protein accession | YP_001189043 |
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| Protein GI | 146308578 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.187188 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCGG CGCACTGGCA GGCAGACCTG CATCAAATCC GACAACTGCG GCTGTTTCAC
AAGGTGGCCG CCAGCAGCCT GGACCACCTG CTGCAGGAGT TCCGCGCCTG CGAGCTGGAG
GCTGGCGAAG TCCTGCTCTC TCCTTTCAAC CGCAACCAGC ATCTCTACCT GCTGATCGAA
GGTCAGCTGC GCGTCTACCT CGGCTCGCTG GACAACCAGG CGGTCAGCAC CCTGGAGGTC
GGCGACTGCG CCGGCGAAAT CAGCTTCATC GACAACGAAC ACCCTTCTGC CTACGTGGTG
GCCGAGCGCC GCTCCACCGT CTTGCGCCTG CACCGCGAGT CGCTGGTGGC GCTGTTCCAA
GAGTCGCCGC AGATGATGCA GAACCTGCTG GAGCTGCTCT GCGAGCGGGT GCGCAAGGGC
AATCGGCTGA TTCTCGACAG CGAGCAGAAC GCCAACGTCG ACACCTTGAC CGGCTGCTTC
AACCGGCGCT GGCTGGAGCA TGTGTTCGAA CGCGAAAGCA CCCGCTGCGC CTTCAATGAC
GAGCCCTTGT CGTTGCTGAT GCTGGATGTC GATCACTTCA AGGCCTACAA CGACCAGCAT
GGCCATCTGG CCGGCGACTA CGCCCTGTGC CTGGTCGCCC ATACCCTGCG CAGCCAGCTG
CGACCCAAGG ACAGCCTGAT CCGCTTCGGC GGCGAGGAGT TCGTCATCCT CCTGCCGGAA
ATCTCCGCCG AGTCCGCACG CGGCATCGGC GAGCGCCTGC GTGTCAGCCT GGAGCAGATC
GCCTCCTTCT ATTCCCCGGT CGGCATCCTG CCCGGCGTGA CCATCTCCAT CGGCCTGGCG
CAGATGCAGC AGAAGGACAG CCTGCAGGGC CTGATCGCCC GCGCCGATGC CGCGCTGTAC
CAGGCCAAGC AACAGGGGCG CAACTGCCTC TGCGGTTAA
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| Protein sequence | MKPAHWQADL HQIRQLRLFH KVAASSLDHL LQEFRACELE AGEVLLSPFN RNQHLYLLIE
GQLRVYLGSL DNQAVSTLEV GDCAGEISFI DNEHPSAYVV AERRSTVLRL HRESLVALFQ
ESPQMMQNLL ELLCERVRKG NRLILDSEQN ANVDTLTGCF NRRWLEHVFE RESTRCAFND
EPLSLLMLDV DHFKAYNDQH GHLAGDYALC LVAHTLRSQL RPKDSLIRFG GEEFVILLPE
ISAESARGIG ERLRVSLEQI ASFYSPVGIL PGVTISIGLA QMQQKDSLQG LIARADAALY
QAKQQGRNCL CG
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