| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3470 |
|---|
| Symbol | |
|---|
| ID | 5105940 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 3828336 |
|---|
| End bp | 3829202 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640504724 |
|---|
| Product | formyltetrahydrofolate deformylase |
|---|
| Protein accession | YP_001188952 |
|---|
| Protein GI | 146308487 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0788] Formyltetrahydrofolate hydrolase |
|---|
| TIGRFAM ID | [TIGR00655] formyltetrahydrofolate deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACACG CCACCGACCA TTTCATCATC AAGATCAGTT GCCCGGCAGC CTCGGGCATC
GTTGCGGCGG TCACCACCTA TCTGGCGGAC AGGGGTTGCT ACATCAGCGA GATGTCGCAG
TTCGACGACG AGACCAGCGG CCGTTTCTTC ATGCGCGCGG TGTTTCGCTT CAACGACCGC
TACGAAGGCG ATATCGACGA AGTCGAGCAA GGCTTCGTGG CCGTGGCCCA GCGTTTCGAG
ATGGAATGGG CGCTGCACAG CACCGCTCAG CCCATGCGCG TGCTGCTGAT GGTGAGCAAG
TACGATCACT GCCTGGTGGA CCTGCTCTAT CGCCACCACA AGGGCGAGTT GGACATGCAG
ATCACCGCCA TCGTCTCCAA CCACCTCGAG CTGCGGCCCA TGGCCGAGCG CGAGGGCATC
CGCTTCATCT ACCTGCCGGT GACCAAGGAC AGCAAGGCCC AGCAGGAAGC GGCGCTGATG
AAGATCGTCG ACGAGACCCA GACCGAGTTG GTGGTGCTGG CCCGCTACAT GCAGATCCTT
TCCGACGATC TGTGCAAGCA GCTCTCGGGC CGCGCCATCA ACATCCACCA TTCCTTCCTG
CCCGGCTTCA AGGGCGCCAA GCCCTACCAC CAGGCCTACG AGCGCGGCGT GAAGCTGATC
GGCGCCACCG CACACTACGT CACCTCGGAC CTCGACGAAG GCCCGATCAT CGAGCAGGAA
GTGCAGCGCG TGGACCATGC CTACCTGCCC GACGATCTGG TCGCCATCGG CCGTGATACC
GAAACCGTGG CCCTGTCCAA GGCGGTGAAA TACCACCTGG AGCATCGGGT CTTCCTCAAT
GGCGAGCGCA CGGTGATCTT CCGGTGA
|
|---|
| Protein sequence | MQHATDHFII KISCPAASGI VAAVTTYLAD RGCYISEMSQ FDDETSGRFF MRAVFRFNDR
YEGDIDEVEQ GFVAVAQRFE MEWALHSTAQ PMRVLLMVSK YDHCLVDLLY RHHKGELDMQ
ITAIVSNHLE LRPMAEREGI RFIYLPVTKD SKAQQEAALM KIVDETQTEL VVLARYMQIL
SDDLCKQLSG RAINIHHSFL PGFKGAKPYH QAYERGVKLI GATAHYVTSD LDEGPIIEQE
VQRVDHAYLP DDLVAIGRDT ETVALSKAVK YHLEHRVFLN GERTVIFR
|
|---|
| |