Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3460 |
Symbol | |
ID | 5105930 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 3816415 |
End bp | 3818760 |
Gene Length | 2346 bp |
Protein Length | 781 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640504714 |
Product | glycine cleavage T protein (aminomethyl transferase) |
Protein accession | YP_001188942 |
Protein GI | 146308477 |
COG category | [E] Amino acid transport and metabolism [S] Function unknown |
COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase) [COG3665] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR00528] glycine cleavage system T protein |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCTGC CCGTGATTTC CCGGCCGCTG GAGCCGGCGC TGTTCGCCCG TACCCCAGGG CTGGAACGCC ACCGCGTCGC CCCCGGCGGC TTGACCGTGG TGGCCCTGGA GCCGGGCGAC CGCCTGGAGC TGATCGACCT CGAAGGCGAC CAGGCCGCCG AGCTGCTGGC CTTCGCCGAC AATGGCCGAG CGGCGCTTAC CGCCCTCGGG CTCGCCGCCT GCCCGGGTGC CGAGTTCATC ACTCACCTGC TGCACGACGG CAGCCGCGAG GCGGCCCAGG TCGGCGCCGC GCTGCTGCGC CGCGGCATCG ATTGCCGCCA CCTGCCGCCT GCCGCGCGGC TCTGGCCACC CGGCACCCCA GCCGGTTACC GCCGCACCCT CAGCGCCAGC GCAGCACTGC TGGTGATAGT CGCCGCACCC GGCGGACAGA CGCCGGTGGA CCAGCAGACG CGCGCCAGCG AGCTGCGCCT GCTGATCCAA CGCGCCAACC CGTCCAGCCT GCTGCTGCCG ACACTGCCGG CGCCGCTCGG CGAACTGGTT GACGAGTTCA CCATCCACCC CGGCACGGCG CGCGATTACG TGGTCGCTGC CGGCCAGTAC ATCCAGGTGA TCGACGTCGC CGGGCGGCAA TGCTCGGACT TCGTCGCCTT CGACCGGCGC GGCCTCGACG CCGGCCGCGA GATCGACCTC GACCCCACCG TCACCCGCAC CCTGAACGGC AATGCCTACC CGGGCCCCGG CCTGTTCAGC AAATTCTTCG ACCGCGACAT GCAGCCGATG CTGGAGGTGG TGCGCGACAC CGTCGGCCGC CACGACACCT TTGCCCTGGC CTGCACCGCG CGCTACTACG AAAGCCAGGG TTACTTCGGC CACGCCAACT GCAGCGACAA CATCAGCCGC GCACTGGCCA AGCATGGCGT GCACGGCCGC CCCGGCTGGC CGGCGATCAA TTTCTTCTTC AACACCGGCA TCGACGCCCA CCAGCAACTG ACCCTCGACG AGCCCTGGTC GCGCCCCGGC GACTATGTAC TGCTGCGCGC CATGACCGAC CTGGTCTGCG CCAGCAGCTC CTGCCCGGAC GACATCGACC CGGCCAATGG CTGGCAGCCC ACCGACATCC ACATCCGCGT GTATTCCGAA CAGGAGCGTT TCAGTATCGC CATGGCCACT CGCAAGACAC CCGACGCCGA CCCGGTGCTG ACCCGCGAGA GCGGCTTCCA CCCCGGCACC TCTGCCCTCA CCCGCCACTT CATCGACTAC CGCGGCTGGT GGACCCCCAC CCAGTTCGAC GGCTACGGCA CGCTGGCGGA ATACCACGCC TGCCGCGAAC GGGTCGCGGT GATGGACCTC TCCGCCCTGC GCAAATTCGA GGTGCTCGGC CCCGACGCCG AAGCCCTGCT CAACTACTGC CTGACCCGCG ACGTGCGCAA GCTGGCGGTA GGCCAGGTGG TCTACAGCGC CATGTGCTAC GAGCATGGCG GCATGCTCGA CGACGGCACG CTGTTGCGCC TTGGCCCGGA CGCCTTCCGC TGGATCGGCG GCGAGGACTT CGGTGGCGAA TGGCTGCGCC AGCAGGCCGA GAAACTGGAC ATGAAGGTGT GGATCAAATC CGCCTCCGAG CAGATCCACA ACATCGCTGT GCAAGGCCCG CTCAGCCGCC AACTGCTGCA GCAGATGATC TGGACGCCAG GTACCCAGCC GCCCCTGGCA GAGCTGGGCT GGTTCCGCTT CCTCACCGGC CGCTTGGGCG ACTACAACGG CTGTCCGCTG ATGGTCTCGC GCACCGGCTA CACCGGCGAG CTGGGCTTTG AAATCTGGTG CCACCCCAGC GATGCCATGC AGATCTGGCA ACGCCTCTGG CAACTCGGCG AGCCACTGGG CCTGGCACCG CTCGGCCTGC ACGCCCTGGA CATGCTGCGC ATCGAGGCAG GGCTGATCTT CGCCGGCTAC GAGTTCAGCG ACCAGACCGA CCCGTTCGAG GCCGGCATCG GCTTCTGCGT GCCGCTGAAG AGCAAGCAGG ACGATTTTAT CGGCCGCCAG GCGCTGCTGC GGCGCAAGGA ACACCCGATG CACAGGCTGG CCGGCCTCGA ACTGGAAGGC AACGAGCCAG CGTCCCACGG CGACTGCGTA CACCTCGGCC GCGCCCAGGT CGGGGTGATC ACCAGCGCCA CCCGCTCGCC AGCGCTGGGC AAGAACATCG CCCTATGCCG TCTCGACGCC TCCTACTGCG AGCCCGGCAC CCGGCTGGAA GTGGGCAAGC TCGACGGCCA GCAGAAACGC ATCGCGGCAA CGGTGAGCGC CGGCACTGTC GCCTACGACC CGGACAAGAA CCGTGTGCGG GCGTAG
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Protein sequence | MNLPVISRPL EPALFARTPG LERHRVAPGG LTVVALEPGD RLELIDLEGD QAAELLAFAD NGRAALTALG LAACPGAEFI THLLHDGSRE AAQVGAALLR RGIDCRHLPP AARLWPPGTP AGYRRTLSAS AALLVIVAAP GGQTPVDQQT RASELRLLIQ RANPSSLLLP TLPAPLGELV DEFTIHPGTA RDYVVAAGQY IQVIDVAGRQ CSDFVAFDRR GLDAGREIDL DPTVTRTLNG NAYPGPGLFS KFFDRDMQPM LEVVRDTVGR HDTFALACTA RYYESQGYFG HANCSDNISR ALAKHGVHGR PGWPAINFFF NTGIDAHQQL TLDEPWSRPG DYVLLRAMTD LVCASSSCPD DIDPANGWQP TDIHIRVYSE QERFSIAMAT RKTPDADPVL TRESGFHPGT SALTRHFIDY RGWWTPTQFD GYGTLAEYHA CRERVAVMDL SALRKFEVLG PDAEALLNYC LTRDVRKLAV GQVVYSAMCY EHGGMLDDGT LLRLGPDAFR WIGGEDFGGE WLRQQAEKLD MKVWIKSASE QIHNIAVQGP LSRQLLQQMI WTPGTQPPLA ELGWFRFLTG RLGDYNGCPL MVSRTGYTGE LGFEIWCHPS DAMQIWQRLW QLGEPLGLAP LGLHALDMLR IEAGLIFAGY EFSDQTDPFE AGIGFCVPLK SKQDDFIGRQ ALLRRKEHPM HRLAGLELEG NEPASHGDCV HLGRAQVGVI TSATRSPALG KNIALCRLDA SYCEPGTRLE VGKLDGQQKR IAATVSAGTV AYDPDKNRVR A
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