| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3335 |
|---|
| Symbol | |
|---|
| ID | 5105807 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3682504 |
|---|
| End bp | 3682875 |
|---|
| Gene Length | 372 bp |
|---|
| Protein Length | 123 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640504591 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_001188819 |
|---|
| Protein GI | 146308354 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.00388895 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCGG TGACTCACTG TCAACCCGAC GCCGATGCGG TACTGGCCAA GGCGCTGCTC
AATACCCGTG AGCAACTGGG GTTGACCCAA CAGGAACTGG CGGACATCGT CGGCGTCCAT
CGCAGTGCCA TCGGGCGCTG GGGCGAGCAG GGCGGTTTGC GTCCGCAGAG CAAGACCGGT
GAACTGGCGT TGTTGCTGAT CCGGGTCTAC CGAGCCCTGT TCGCCCTGTT CGGCGGCAAT
CAGCAGGACA TGCGCCATTT TCTGCGTACC CAGAACCGCC ATCTGGCTGG CGTGCCGCTG
CAGCAGATGA CTCAGGTGCA GGGCTTGGTG CGCGTCGTCG AGTATCTGGA CGCCATTCGC
GGCAAGGTCT GA
|
|---|
| Protein sequence | MSAVTHCQPD ADAVLAKALL NTREQLGLTQ QELADIVGVH RSAIGRWGEQ GGLRPQSKTG
ELALLLIRVY RALFALFGGN QQDMRHFLRT QNRHLAGVPL QQMTQVQGLV RVVEYLDAIR
GKV
|
|---|
| |