| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3217 |
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| Symbol | ligD |
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| ID | 5106546 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3556803 |
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| End bp | 3559316 |
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| Gene Length | 2514 bp |
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| Protein Length | 837 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640504474 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001188702 |
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| Protein GI | 146308237 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.311781 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAGG CGCAGAGCGA ATACAGCCGC AAACGCAATT TCGAACGCAC CAGCGAGCCG
GCCGAGCGCA CCGGCAAGCG GCGCAGCAAG GCCGGCGCGC TGCGCTTCGT GGTGCAGAAG
CACGACGCCA GGCGCCTGCA TTACGACTTC CGCCTGGAGC TGGATGGCAC CCTGAAGAGC
TGGGCGGTGC CCAAGGGTCC GAGCCTGGAC CCGCGCGACA AGCGCCTGGC CGTGCACGTC
GAGGATCACC CGCTGGAGTA CGCCAGCTTC GAGGGCAGCA TTGCCGAGGG CAACTACGGC
GCCGGCGACG TCATCGTCTG GGACCAGGGC ATCTGGCAGC CCCAGGGCGA TCCGGCCGCT
GCCTATGCGG CGGGCAAGCT CAAGTTCAGC CTGGTCGGCG AGAAACTGTC CGGCGACTGG
ACCCTGGTGC GTACCCGCCT GCGCGGCAGC GGCGACAAGG AGCAGTGGCT GCTGATCAAG
GAGCGCGACG ACATCGCCCG CCCCAGCGAC GAGTACGACA TCGTCGAGGC GCAGCCGCAG
AGCGTGATCA GCGGCGCGTT GGTGGGAGGG CCGAGCGCCA AGGCCAAGGG CAAGACGCCG
AGCAAGGCCA AGGCGCCGAA GCCGGCTGCC GCCTTTCCCG AGAGCCTGGC GCCACAGCTG
GCAACCCTGT CCGACCGCCC ACCTGAGGGC GATTGGCTGT ACGAGGTGAA GTTCGACGGC
TACCGCATTC TCGCCCGCAT CCGCGACGGC GAGGTGCGCC TGTTCACCCG CAACGGCCAC
GACTGGACGC AGCGTCTGCC GCTGCAGGCC AAGGCCCTGG CCAAGCTGGG CCTGCACGAC
AGCTGGCTGG ACGGCGAGGT GGTGGCGCTC AACGAACAGG GCCTGCCCGA CTTTCAGCAA
CTGCAAAACG CCTTCGATAT CGGCCGCAGC CACGACCTCG TCTACTACCT GTTCGATGCA
CCGTTCATCA ACGGCGAGGA CCTGCGCCAG ACCCCGCTGG AGCAGCGACG GGCACAGCTC
AAGCTGCTGC TGGGCAACAC GCGCAACGGC CCGCTGCGCT TCTCTGCCGC ATTCACCGCG
CACCACCGCG ACATCGTGGA AAGCGCCTGC GCCATGTCCC TGGAGGGGGT GATCGGCAAG
CGCGCCGGCA GCCTCTACGT GTCGCGCCGC AGTGCCGACT GGATCAAGCT CAAGTGCCGC
CTGCGCCAGG AGTTCGTCAT CGTTGGCCAT ACCCAGCCGC AAGGCAGCCG CAGCGGTTTC
GGGGCACTGC TGCTGGCAGT CAACGAGGAC GACGGCCTGC GCTACGCCGG ACGCGTCGGT
ACGGGGTTCG GCGAAGCGGC GCTGAAGGCG CTGCATCAGC GTCTGCAAGA GCTGGCACGC
GAGGATTCGC CGCTGGCGCA CAAGCTGACC GCAGCACAGG CCCGCGGCGT CAGCTGGGTC
GAGCCGCAGT TGGTCGGCGA AGTGGAATTC GCCGAATGGA CGCGCGAGGG CATCGTGCGC
CAGGCCAGCT TCGTCGCCCT GCGCAGCGAC AAGCCGGCGG CGCAGATCGT CCGCGAGCGG
CCCGGTGCGC CGCAATCCTC GCCACCGCGC AAGCCGGCTG CCAAGGCAGG CGGCAAGCCG
GTGGTCGCCG GCGTGGCGAT CAGCAATGCG CAGCGGGTGA TCGACCCCGA CAGCGGCACC
AGCAAACTGC AGCTGGCGCA GTTCTACGAA AGCATCGCCG ACTGGCTGCT GCCGTACCTG
AACAATCGCC CGGTATCGCT GCTGCGCGCA CCGGAGGGCA TCGGCGGCGA GCAGTTCTTC
CAGAAGCATG CCGAGCGCCT GGCCATTCCC AACATCAAGC ACCTCGACCC CGAGCTCGAC
CCCGGCCATG CCCGGCTGAT GGAGATCGAC AGCGTCGCCG CGCTGGTGGG CGCGGCGCAG
ATGGGCTGCA TCGAACTGCA CACCTGGGGC GCCACCAGCG ACCGCATCGA GACGCCGGAT
CTGTTCGTGC TCGACCTCGA CCCGGACCCC GCGCTGCCCT GGCGCAGCAT GCTCGAGGCC
ACCCGCCTGA CCCTGACGGT GCTCGACGAA CTGGGCCTGC AGGCCTTTCT CAAGACCAGC
GGCGGCAAGG GCATCCATAT CATCGTGCCG CTGGCACGAC GCGCCGGTTG GGACGAGGTC
AAGGCCTTCG CCAAGGCCAT CGCCCAGTTC ATGACCAGCC AGTTGCCGGA GCGCTTCACC
GCCACCTCCG GGCCGAAGAA CCGGGTCGGC AAGATCTTCA TCGACTACCT GCGCAACAGC
CGCGGCGCCA GCACCGTGGC CGCCTATTCG GTCCGTGCGC GGCCAGGGTT GCCGGTGTCG
GTGCCCATCA GCCGCGACGA GCTGGATGGC CTGCGCAGCG CCCAGCAATG GACGGTCGGC
AATCTGCAGC AGCGTCTGGA TGGGCTGAAG CAGGATCCCT GGCAGGGCTA CAGCAACCGC
CAGCGCCTGA CACGCGCCAT GTGGGACAGG CTCGGCGCCA AGCCCCCCTC GTAG
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| Protein sequence | MAKAQSEYSR KRNFERTSEP AERTGKRRSK AGALRFVVQK HDARRLHYDF RLELDGTLKS
WAVPKGPSLD PRDKRLAVHV EDHPLEYASF EGSIAEGNYG AGDVIVWDQG IWQPQGDPAA
AYAAGKLKFS LVGEKLSGDW TLVRTRLRGS GDKEQWLLIK ERDDIARPSD EYDIVEAQPQ
SVISGALVGG PSAKAKGKTP SKAKAPKPAA AFPESLAPQL ATLSDRPPEG DWLYEVKFDG
YRILARIRDG EVRLFTRNGH DWTQRLPLQA KALAKLGLHD SWLDGEVVAL NEQGLPDFQQ
LQNAFDIGRS HDLVYYLFDA PFINGEDLRQ TPLEQRRAQL KLLLGNTRNG PLRFSAAFTA
HHRDIVESAC AMSLEGVIGK RAGSLYVSRR SADWIKLKCR LRQEFVIVGH TQPQGSRSGF
GALLLAVNED DGLRYAGRVG TGFGEAALKA LHQRLQELAR EDSPLAHKLT AAQARGVSWV
EPQLVGEVEF AEWTREGIVR QASFVALRSD KPAAQIVRER PGAPQSSPPR KPAAKAGGKP
VVAGVAISNA QRVIDPDSGT SKLQLAQFYE SIADWLLPYL NNRPVSLLRA PEGIGGEQFF
QKHAERLAIP NIKHLDPELD PGHARLMEID SVAALVGAAQ MGCIELHTWG ATSDRIETPD
LFVLDLDPDP ALPWRSMLEA TRLTLTVLDE LGLQAFLKTS GGKGIHIIVP LARRAGWDEV
KAFAKAIAQF MTSQLPERFT ATSGPKNRVG KIFIDYLRNS RGASTVAAYS VRARPGLPVS
VPISRDELDG LRSAQQWTVG NLQQRLDGLK QDPWQGYSNR QRLTRAMWDR LGAKPPS
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