| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3160 |
|---|
| Symbol | |
|---|
| ID | 5106489 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 3500879 |
|---|
| End bp | 3501580 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640504416 |
|---|
| Product | NAD(P)H dehydrogenase (quinone) |
|---|
| Protein accession | YP_001188645 |
|---|
| Protein GI | 146308180 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1182] Acyl carrier protein phosphodiesterase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.119016 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCATA TTCTGCATCT CGACGCCAGC GCCCGCCCCG GCCTCGCCGG CAAGGATCAG
CACGGTTCGC ACAGCCGCAA TCTCAGCCAT CGCTTCATCA GCCAGTGGCA GGCGCGCCAC
CCGCAGGACA CCGTCACCTA CCGCGACATC GGCCAGAATC CGCCCTCGAT CATCAACCAT
GACTGGATCG CCTCGTCCTT CACCCCCGAG CCGCAGCGCG AGGCCTGGAT GCGCGACACC
CTGGCCGAGA GCGATCGTCT GGTGGACGAA CTGATCGCCG CCGACGTCCT GGTGATCGGC
ACGCCGCTGT ACAACTTCGG CATGCCCGCC GCGCTCAAGG CGTGGATCGA CCAGGTGGTG
CGCCCCGGCC GCACGGTGGA GGTGGACGAA AGCAACCCGC TCGATCCCTA CGTGCCCAAG
CTGGCCGACC GGCCGCGACA TCTGGTGATC CTCACGGCAC GCGGCGGTGT GGGTTTCGAT
GCGGGCGGCG AGATGGCGCA CATGAACCAT CTGGAGCCGA ACCTGATCAC CGCACTCGGC
TTCATCGGCA TCACCCGTGT GCACCAGGTC GCCATCGAAG GTCAGGAGGT GGGCGGCGAA
CTGCTCGCCG AGTCAGTCAA AAAGGCCTTG GGCAAGGTCG ATGCGCTGGT GGCCGAGCTG
CAGCGTTCAT TGCAAGCCGA GCGCGTCGAA GAGCCGGCGT GA
|
|---|
| Protein sequence | MTHILHLDAS ARPGLAGKDQ HGSHSRNLSH RFISQWQARH PQDTVTYRDI GQNPPSIINH
DWIASSFTPE PQREAWMRDT LAESDRLVDE LIAADVLVIG TPLYNFGMPA ALKAWIDQVV
RPGRTVEVDE SNPLDPYVPK LADRPRHLVI LTARGGVGFD AGGEMAHMNH LEPNLITALG
FIGITRVHQV AIEGQEVGGE LLAESVKKAL GKVDALVAEL QRSLQAERVE EPA
|
|---|
| |