| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2935 |
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| Symbol | |
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| ID | 5107653 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3251464 |
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| End bp | 3253818 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640504190 |
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| Product | Patched family protein |
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| Protein accession | YP_001188422 |
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| Protein GI | 146307957 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1033] Predicted exporters of the RND superfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAGC ATCAACACAA GCCTGCCTCC TTTCTCGAGC GGCTGATTTT CAACAATCGC
CCGGCGGTGA TCCTGATCTG CCTGCTGATC AGCATCTTCC TGTTCTACCA GGCTGCCCAG
GTACGCCCGC AGACCAGCTT CGAGAAGATG ATTCCGCTGG GCCACCCCTA CATCCAGAAG
ATGCTCGAGC ACCGCAACGA CCTGTCCAAC CTGGGCAATA CCGTGCGGAT TTCGGTGGAG
GCCACCGAGG GCGACATCTT CAGCAAGGAA TACATGGAGA CCCTGCGTCA GGTTCATGAC
GAGGTGTTCT ACATCCCCGG CGTCGACCGT TCCGGTCTCA AGTCGCTGTG GAGCCCGAGC
GTACGCTGGA CCGAAGTGAC CGAAGAGGGC TTCGCCGGTG GCGAGGTGAT TCCGCAGACC
TACGACGGTT CCGCCGACAG CCTGGAAGAC CTGCGCAGCA ATATCCTCAA GTCCGGCCAG
ATCGGCCGTC TGGTGGCGAA CAACTTCAAG TCCAGCATCG TCGACGTGCC GCTGCTGGAG
TCCTATCCGG ACCCGGAAGA TCAGAGCAAG CTGATCAAGC TGGACTACCA GAAGTTCTCC
CACGAACTGG AAGAGAAGAT TCGCGAGAAG TACGAGGCGC AGAATCCCAA CGTCAAGGTG
CACATCATCG GCTTCGCCAA GAAGGTCGGC GACCTGATCG ATGGCCTGGT GGGCGTAGCG
CTGTTCTTCG CCGTCGCCAT CGGCATCACC TTCGTGCTGC TGCTGTGGTT CACCCACTGC
TTCAAGAGCA CCCTGGCTGT GGTGATCACC ACCCTGATCG CGGTGATCTG GCAGCTCGGC
CTGCTGCACA CCCTGGGCTT CGGTCTCGAT CCCTATTCGA TGCTGGTGCC GTTCCTGGTG
TTCGCCATCG GTATCTCCCA CGGGGTACAG AAGATCAACG GCATCGCCAT GGCCTCGGGC
GAGGCGACCG ACGCGCTTTC CGCTGCGCGC ATGGCCTTCC GTCAGCTGTT CATCCCCGGC
CTGGTGGCGC TGCTGTCCGA CGCCGTGGGT TTCGTCACCC TGCTGCTGAT CGACATCGGC
GTGATCCGCG AGCTGGCCAT CGGCGCCTCG ATGGGCGTGG CGGTGATCAT CCTCACCAAC
CTGATCCTGC TGCCGGTACT GATTTCCTAC ATCGGCATCG GCAAGCGTGC GGTGAAGAAG
AGTCGTGAGG AGGCTGCCAA GGATCATCCG ATCTGGCGCG CCATTTCCAA CTTCGCTCAC
CCGATGGTGG CACCGATCTC CGTGGTCATC GCCGTCGTGG CGCTGGCTGG TGGCGTCTGG
TACGGACAGA ACCTGAAGAT CGGCGATCTC GACCAGGGCG CGCCGGAACT GCACCCGGAT
TCGCGCTACA ACCTGGACAA CGACTTCGTC ATCCGCAACT ACTCGACCAG TTCCGACGTG
CTGGTGGTGA TGATCAAGAC CGGCCCCGAG GGCTGCTCCA CCTATGACAG CCTGGCCGCG
ATGGACGAGC TGATGTGGAA GATGGAGAAC ACCGAGGGCG TGCAGTCGGC CATCTCCATG
GTCACCGTGT CCAAGCAGGT GATCAAGGGC ATGAACGAGG GCAACCTGAA ATGGGAAACC
CTGTCGCGCA ACCAGGACGT GCTGAACAAC TCCATCGCCC GTGCCGAAGG CCTGTACAAC
GCCGACTGCT CGGTGGCGCC GGTGCTGGTG TTCCTTGAGG ATCACAAGGC CGAGACCCTG
TCGCGCGCGG TAGCCGCGGC CGAGGAGTTC GCCGCGCAGC ACAACACCGA CGAGCTGCAG
GTGGTACTGG CGGCCGGTAA CGCCGGTATC GAGGCGGCCA CCAACGAGGT GATCGCCGCG
TCCGAGACCA CCATGCTGAT CGCCGTGTAT GCCGCGGTGA GCATCATGTG CCTGCTGACC
TTCCGTTCGC TGGCCGCGAC CCTCTGCGTG ATCCTGCCGC TGGTGTTGAC CTCGGTGCTG
GGCAACGCGC TGATGGCCTT CATGGGCATC GGCGTGAAGG TCGCCACCCT GCCGGTGATC
GCCCTGGGCG TGGGCATCGG TGTGGACTAC GGCATCTACA TCTACAGCCG TCTGGAGACC
TACCTGCGTC AGGGGCTGTC GCTGCAGGAC GCCTACTACG AGACGCTCAA GTCCACCGGT
AAGGCGGTGC TGTTCACCGG CGTCTGCCTG GCGATCGGCG TGGCGACCTG GATCTTCTCG
GCGATCAAGT TCCAGGCCGA CATGGGCCTG ATGCTGACCT TCATGTTCCT CTGGAACATG
ATCGGCGCGA TCTGGCTGCT GCCGGCCCTG GCCCGCTTCC TGATCAACCC GGAGAAGCTG
CGCGCCAAGG CCTGA
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| Protein sequence | MTKHQHKPAS FLERLIFNNR PAVILICLLI SIFLFYQAAQ VRPQTSFEKM IPLGHPYIQK
MLEHRNDLSN LGNTVRISVE ATEGDIFSKE YMETLRQVHD EVFYIPGVDR SGLKSLWSPS
VRWTEVTEEG FAGGEVIPQT YDGSADSLED LRSNILKSGQ IGRLVANNFK SSIVDVPLLE
SYPDPEDQSK LIKLDYQKFS HELEEKIREK YEAQNPNVKV HIIGFAKKVG DLIDGLVGVA
LFFAVAIGIT FVLLLWFTHC FKSTLAVVIT TLIAVIWQLG LLHTLGFGLD PYSMLVPFLV
FAIGISHGVQ KINGIAMASG EATDALSAAR MAFRQLFIPG LVALLSDAVG FVTLLLIDIG
VIRELAIGAS MGVAVIILTN LILLPVLISY IGIGKRAVKK SREEAAKDHP IWRAISNFAH
PMVAPISVVI AVVALAGGVW YGQNLKIGDL DQGAPELHPD SRYNLDNDFV IRNYSTSSDV
LVVMIKTGPE GCSTYDSLAA MDELMWKMEN TEGVQSAISM VTVSKQVIKG MNEGNLKWET
LSRNQDVLNN SIARAEGLYN ADCSVAPVLV FLEDHKAETL SRAVAAAEEF AAQHNTDELQ
VVLAAGNAGI EAATNEVIAA SETTMLIAVY AAVSIMCLLT FRSLAATLCV ILPLVLTSVL
GNALMAFMGI GVKVATLPVI ALGVGIGVDY GIYIYSRLET YLRQGLSLQD AYYETLKSTG
KAVLFTGVCL AIGVATWIFS AIKFQADMGL MLTFMFLWNM IGAIWLLPAL ARFLINPEKL
RAKA
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