| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2920 |
|---|
| Symbol | |
|---|
| ID | 5107638 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3231036 |
|---|
| End bp | 3231755 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640504175 |
|---|
| Product | general secretion pathway protein J |
|---|
| Protein accession | YP_001188407 |
|---|
| Protein GI | 146307942 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4795] Type II secretory pathway, component PulJ |
|---|
| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.34948 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.107134 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGTA GCGGCGAGCG TCTTCGTGAA CGGAGTGGTC GCGCGCCAAG CGACCGGGCG
ATGCGCGGCT TCACCCTGCT CGAGCTATTG ATCGCCATCG CCATCTTCGC CCTGCTGGGG
CTGGCCACCT ACCGCATGCT CGACAGCGTG CTCAGTGCCG ATGCCGCCAC ACGCGCCCAT
GAACAGCAGT TACGCGAGCT GACGCGGGCC ATGGCGGCCT TCGAGCGCGA CCTGCGCCAG
GTGGTGGTGC GGCCGATTCG CGACGCTTTC GGCGATCCCC AGCCGGCACT GCGCAGCGAT
CTGGCTGACG CCAGCGCCCT GGAGCTGACC CGTTCCGGCT GGCGCAACCC GCTGGGCCAG
CCGCGTGCCG AGTTGCAACG GGTACGCTGG CAGCTCAGTG GTGAGCGCTG GCAGCGCCGC
TACTGGCGCG TGCTGGACCG CGCTCAGGAC AGCCAGCCGC AGGTGCAGCA GGCGCTGGAT
GGGGTGCAGT CCGTGAGCCT GCGCTACCTG GACAAGGACG GCCAGTGGCA AGCCGACTGG
CCACCGGCCA ATGCTTCGGG CGATGGCCTG CTGACCGGGC TGCCGAAGGC GGTGGAGCTG
CGCCTGCAGC ACCGACGGCA CGGCGAGCTG CGCCGTCTGC TGCGATTGCC GGATATCGCC
CCGGAGAATC TCGGCGGGCC CGAGGTTCCC AACGAAGAGC CCGAGGAGCC GCAGACATGA
|
|---|
| Protein sequence | MSRSGERLRE RSGRAPSDRA MRGFTLLELL IAIAIFALLG LATYRMLDSV LSADAATRAH
EQQLRELTRA MAAFERDLRQ VVVRPIRDAF GDPQPALRSD LADASALELT RSGWRNPLGQ
PRAELQRVRW QLSGERWQRR YWRVLDRAQD SQPQVQQALD GVQSVSLRYL DKDGQWQADW
PPANASGDGL LTGLPKAVEL RLQHRRHGEL RRLLRLPDIA PENLGGPEVP NEEPEEPQT
|
|---|
| |