| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2786 |
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| Symbol | |
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| ID | 5107582 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3066815 |
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| End bp | 3068788 |
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| Gene Length | 1974 bp |
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| Protein Length | 657 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640504036 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_001188273 |
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| Protein GI | 146307808 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCCCG AGCTCGGCCA TCTGGCGATG ATCCTGGCGC TGTGCCTGTG CCTGGTACAG
GCCACGCTGC CGTTGATCGG TGCCTGGCGC GGTGACCACC AGTGGATGAG CCTGGCGCAG
CCGGCGGCCT GGGGGCAGTT CGTCTTCCTG TTGTTCTCGT TCATCTGCCT GACCTATGCC
TTCATGGTCG ACGACTTCTC CGTCGCCTAT GTGGCGCACA ACTCCAACAG CGCGCTGCCC
TGGTACTACA AGTTCAGTGC GGTGTGGGGC GCCCACGAAG GCTCGCTGCT GCTGTGGGCG
CTGATCCTGG CCGGCTGGAC CTTCGCCGTG GCGATCTTCT CGCGCCATCT GCCGGAAGAG
ATGCTCGCCC GCGTGCTGGC GGTGATGGGC ATGATCAGCA TTGGCTTCCT GCTGTTTCTG
ATCGTCACCT CCAACCCCTT CGAGCGCCTG CTGCCGAATT CACCGATGGA CGGACGCGAC
CTCAACCCGC TGCTGCAGGA CTTCGGCCTG ATCGTCCATC CGCCGATGCT GTACATGGGC
TACGTCGGCT TCTCGGTGGC CTTCGCCTTC GCCATTGCCG CACTGCTCGG CGGCAAGCTG
GACGCCGCCT GGGCGCGCTG GTCGCGGCCG TGGACCATCG TCGCCTGGGC CTTCCTCGGC
ATCGGTATCG CCCTGGGCTC CTGGTGGGCC TACTACGAGC TGGGCTGGGG CGGCTGGTGG
TTCTGGGACC CGGTGGAGAA CGCTTCCTTC ATGCCCTGGC TGGTGGGCAC CGCCTTGATC
CACTCGCTGG CCGTGACCGA GAAGCGTGGT GTGTTCAAGA GCTGGACGGT GCTGCTGGCC
ATCGCCGCCT TCTCCCTAAG TCTGCTGGGG ACCTTCCTGG TACGTTCCGG CGTGCTCACC
TCGGTGCATG CCTTCGCCAC CGACCCGGAG CGCGGCGTGT TCATCCTCGC CTTCCTGCTG
ATCGTGGTGG GCGGTTCGCT GGCGCTGTTC GCGGTGCGTG CGCCTGTGGT CAAGAGCCAG
GTGGGCTTCG GCCTGTGGTC GCGCGAGACG CTGCTGCTGG TCAACAACAT CGTGCTGGTG
GTGTCGGCCG CGATGATCCT GCTCGGCACG CTGTATCCGC TGGTGCTCGA TGCCCTGACC
GGCGCCAAGC TGTCGGTCGG CCCGCCTTAC TTCAACGCGC TATTCCTGCC GCTTATGGCG
CTGCTGATGG CGGTGATCAG CATCGGTGTG ATCGTGCGCT GGAAGGACAC CCCGCTGAAC
TGGCTGGGCC GCATGCTGGC TCCGGTGCTG GTGGCCAGCG TGGTGCTGGC GCTGATCGCC
ACCTTCGTCC ATGGCGATTT CAACTGGGCG GTGCTGGCCG TGTGCCTGCT GGCGTTCTGG
GTGGTCCTGG CCGGGGTGCG CGACATTCTC GACAAGACCC GCCACAAGGG CCTGTTCAAG
GGCCTGCCGA GCCTGGGCCG CAGCTACTGG GGCATGCAGA TCGCGCACCT GGGTTTCGCC
GTGTGCGCCC TGGGTGTGGT GCTGACCAGC CTCGGCAGCT ACGAGCGCGA CCTGCGCATG
GCGCCGGGTG ATTCCGTGGA GCTGGGCGGC TATCGCTTCC AGTTCGACGG CGCCGTGCAT
CACGAAGGCC CCAACTTCAT TTCCGACAAG GGCACGGTGC GCGTGTTCGA CGGCGAGCGG
CAGATCAAGG TGCTGCACCC GGAGAAGCGT CTGTACACCG TGCAGCAGGC CACCATGACC
GAGGCTGGCA TCGATGCCGG CTTCACCCGT GATCTGTTCG TCGCCCTTGG CGAGCCGCTG
GAGCAGGGCG CCTGGGCGGT GCGCGTGCAC ATCAAACCGT TCGTCCGCTG GATCTGGCTG
GGCGCGCTGC TGATGGGTTT TGGTGGCTTC CTCGCCGCGG CCGACAAGCG CTACCGGATC
AAGGTCAGAA CCCGCGTGCG CGAAGCCCTA GGCATGCAGG AGGCCAGCGC ATGA
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| Protein sequence | MIPELGHLAM ILALCLCLVQ ATLPLIGAWR GDHQWMSLAQ PAAWGQFVFL LFSFICLTYA
FMVDDFSVAY VAHNSNSALP WYYKFSAVWG AHEGSLLLWA LILAGWTFAV AIFSRHLPEE
MLARVLAVMG MISIGFLLFL IVTSNPFERL LPNSPMDGRD LNPLLQDFGL IVHPPMLYMG
YVGFSVAFAF AIAALLGGKL DAAWARWSRP WTIVAWAFLG IGIALGSWWA YYELGWGGWW
FWDPVENASF MPWLVGTALI HSLAVTEKRG VFKSWTVLLA IAAFSLSLLG TFLVRSGVLT
SVHAFATDPE RGVFILAFLL IVVGGSLALF AVRAPVVKSQ VGFGLWSRET LLLVNNIVLV
VSAAMILLGT LYPLVLDALT GAKLSVGPPY FNALFLPLMA LLMAVISIGV IVRWKDTPLN
WLGRMLAPVL VASVVLALIA TFVHGDFNWA VLAVCLLAFW VVLAGVRDIL DKTRHKGLFK
GLPSLGRSYW GMQIAHLGFA VCALGVVLTS LGSYERDLRM APGDSVELGG YRFQFDGAVH
HEGPNFISDK GTVRVFDGER QIKVLHPEKR LYTVQQATMT EAGIDAGFTR DLFVALGEPL
EQGAWAVRVH IKPFVRWIWL GALLMGFGGF LAAADKRYRI KVRTRVREAL GMQEASA
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