| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2778 |
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| Symbol | |
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| ID | 5107574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3059781 |
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| End bp | 3060860 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640504028 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001188265 |
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| Protein GI | 146307800 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.223876 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTCAA CACCAGCATT TCTCTGGCCC AAGTCCTGGT TGATGATCGT CGCCTGTGCG
CTGCCGCTGC TCGGCGGCTG TTCCTCCGAG GCCGAGCCGG CACCCGAGCC GCCGCGGGTG
GCGCTGGTCG AGCCGCTGCA GCCCGCCGCG CCGCAGGCCG AGGCGCTGCG TTTCTCCGGG
GTGGTGCAGA GCGTGACCAC CACCCAGCTG TCGTTCGAGG TGGCCGGGCG CATCGAGCGC
ATCCTGATCG ATGAGGGCAC CCGTGTCAGG CGGGGTCAGC CGCTGGCCGA GCTGGACCGC
ACCGACTACC GCCTGCAGCT GCGTGAAGCC GAGGCGCGCC TGCGTCAGCT GGAGGCGGAT
CTGGCGCGCA AGCGCACCCT GCTTGCCGAA GGCATTCTCG CCCCTGCCGC CATCGAGGCG
CTGGAGGCCA ACACCGTGGC CGCGCGGGTG GCGCGCGACA GCGCCCAGCG CAATATCGAT
CACAGCACCC TGAACGCGCC GTTCGATGGC GTGGTGGCGC GCCGCCTGGC CGAGCCGGAT
ATGGTGGTGG CGGTCGGCAC GCCGGTGTTC GAGATGCAGG ACAACCGGCA GATCGAGGTC
GGCGTCGATC TGCCGGAAAG CGCCGCGCTG AGCATTCCGC TCGGGCCCGA GCTCGAGGCC
GAAGCGCAAC TGGTAATCGC CGACCTGCGC CTGCCGCTGC GTTACAAGGA GCACAGCACC
CAGCCGCGCG AAGGTGCGCG CACCTACCGG CTGGTGCTGC AGGGCGAGCC GCCCGAGGAC
TACAACCTGC TGCCGGGCAT GGCCATGCGC GTCAGCCTGC AGCGCCCCGC ACAGCCACAG
ACTGAGGATG AGGGCTTTCG CCTGCCGCTG TCGGCGCTGC AGACCGGCAG CGACGGCAAG
CACTTCATCT GGCAGGCCGA TGAAGGTCGC GCGCGGCGGC TGGTGGTGCA GCTGCAGCAG
GTCGAAGGCG ATCAGGCGCT GATCCGCGGC GAGGGCCTGC AGGCGCAGCT GCCGATCATC
GTCGCCGGCG GCAGCAAGCT GCACGAGGAC CAGCCGATCG AAGCGCGGGA GCGGAACTGA
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| Protein sequence | MTSTPAFLWP KSWLMIVACA LPLLGGCSSE AEPAPEPPRV ALVEPLQPAA PQAEALRFSG
VVQSVTTTQL SFEVAGRIER ILIDEGTRVR RGQPLAELDR TDYRLQLREA EARLRQLEAD
LARKRTLLAE GILAPAAIEA LEANTVAARV ARDSAQRNID HSTLNAPFDG VVARRLAEPD
MVVAVGTPVF EMQDNRQIEV GVDLPESAAL SIPLGPELEA EAQLVIADLR LPLRYKEHST
QPREGARTYR LVLQGEPPED YNLLPGMAMR VSLQRPAQPQ TEDEGFRLPL SALQTGSDGK
HFIWQADEGR ARRLVVQLQQ VEGDQALIRG EGLQAQLPII VAGGSKLHED QPIEARERN
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