| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2570 |
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| Symbol | |
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| ID | 5108037 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2832542 |
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| End bp | 2834626 |
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| Gene Length | 2085 bp |
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| Protein Length | 694 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640503814 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001188058 |
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| Protein GI | 146307593 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00469469 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.000000281684 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCATCGGC AGAGCCCCCG CGTCTGGCTG CCCGCCCTGC TGCTACCGCT GGCCGCGCAG
GCCGAGAACG CCAGCTATCA GGCCGAGCCG CTGGTGGTTA CCGGCAGCCG CTATCAGGCC
AGCGGCTGGC GCCTGCCCTT TTCGGTCAAC CGCATCGATG CCGAGCAGGC CACTCTGGGT
AAGCCGGGGG TCAATCTGTC CGAGGCGCTC GGCAGCGTGC CCGGCCTGGT GGTGCAAAAC
CGGCAGAACT ACGCGCAGGA TCTGCAGGTG TCCTCGCGTG GCTTCGGCGC CCGCTCGGCC
TTCGGCATTC GCGGTATCAA GCTGCTGGCC GATGGCGTGC CGCTGTCCAA CCCCGACGGC
CAGGGCCAGG CGGCGACCTT CGATCTGGAC AGCCTGGAGC GCATCGAGGT GCTGCGCGGC
CCCTTCGCCA GCGTCTACGG CAGCAACTCC GGCGGGGTGA TCCAGCTGTT CTCGCGCGAT
GGCGAGGGCG CGCCGAGGGT ATCGCTCGAC ACCTCGCAGG CGGCTTTCGG CACCAGCCGC
ACCCGTGTGG CGGCTGAAGG CGGCAATGAC CAGGCGGGCT TTATCCTCAA CCGCTCGCAC
TTCGAGACCG ACGGCTATCG CGACCACAGC GGCGCCATCC TCGACAAGAC CTTCGCCAAG
CTCACCCTGT ATCTGGACGA TGCCAGCAAG CTCAGCCTGA GCTTCAGCCA GCTCGACCAG
AACGACACCC AGGACCCGCA GGGCCTGACC TGGCAGCAGG TGCAGGACGA CCGCCGCGCC
GCCGCCCCCA GCGCTGTGGC GTTCGATACG CGCAAGACGG TCGATCACCA GCAGCTGGCC
CTCAACTACG AGCGCAGCTT CGCCGCCGGC ACCTGGCAGA GCACGGTCTA CAGCGGCACA
CGGCGGGTGA TTCAGTACCA GTCGATCCCG GTGGCGGTGC AGGCCAACCC GTCCCATTCC
GGCGGGGTGA TCGATTTCGA GCGGCGCTTC CATGGCATCG GCAACCGCTG GATCCAGCCC
TTCGACCTGG GCGCCAGCCT GCTGACCCTG ACCGCCGGCC TGGATTACGA CCAGTCGCGC
GACGACCGCC AGGGCTACGA GAACTTCGTC GGCAGCACCC TGGGCGTGAA AGGCAATCTG
CGCCGTGACG AGCGCAACGA GGTCAGCAGC CTGTCGCCCT ACCTGCAGGC CGCCTGGCAA
CTGGGCAAGC TCGACCTGCA GGCCGGCCTG CGCCATAACC AGGTGAAGTT CGAGGTGGAC
GACCGCTTCC TGAGCAATGG CGACGACAGC GGCTCGGTCA CCTACCGCGA GCTGACCCCG
ACCCTGGGTG CCAGCTATGC GCTGCTGCCC GAGCTGAACC TCTACGCCAG CTGGGGCAAG
GGCCTGGAGA CACCGACGCT CAACGAGCTG TCCTACTCGG GCGCCGGCGG TGGTTTCGGC
TTCGACCTGC AACCGGCCAC CAGCAAGCAG CTGGAAATCG GCCTCAAGGC CCGTCTGGCC
GAGGCCACCA GTCTGCAGCT GGCGCTGTTT CAGATCGATA CCGACGACGA GCTGGTGGTG
GCATCCGCCA GCGGCGGCCG CACACGCTTT CAGAACGCCG CACAGACCCG CCGCCGCGGC
GTGGAGCTGG CAATGGAAAG TCAGCTCAGC GAAACCCTGC GCGCCACCCT CGCCTACACC
CGCATCGACG CCGCCTACCG TCAGGACTTC ACCAGCGGCG GTCGGCTGAT CGAAGCGGGC
AATCGCCTGC CCGGCATCCC CGCCAGCACC CTGTATGGCG AACTGGCCTG GCAGCCGCGC
GAGGGCTTCA GCACCGCCCT CGAAGGGCTG TACCGCAGCA AGCTGTATGT CGAGGACAGC
AACGCCGCCA AGGCCGCGCC CAGTTACGCC CTGTTCAACT GGCAGGCGCG CTTCGAGCAA
ACACTCGGTG CCCTGACCTT CAATCAGGTG CTACGCATCG ACAACCTGCT GGACCGCGAA
TACATCGGCT CGGTAATAGT CGGCGAGAGC AACGGCCGCT ATTACGAGCC AGGCCCGGAG
CGGGCCTGGT ATGTCGGCGC AGGTGTGCAG TACCGGTTCG ATTGA
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| Protein sequence | MHRQSPRVWL PALLLPLAAQ AENASYQAEP LVVTGSRYQA SGWRLPFSVN RIDAEQATLG
KPGVNLSEAL GSVPGLVVQN RQNYAQDLQV SSRGFGARSA FGIRGIKLLA DGVPLSNPDG
QGQAATFDLD SLERIEVLRG PFASVYGSNS GGVIQLFSRD GEGAPRVSLD TSQAAFGTSR
TRVAAEGGND QAGFILNRSH FETDGYRDHS GAILDKTFAK LTLYLDDASK LSLSFSQLDQ
NDTQDPQGLT WQQVQDDRRA AAPSAVAFDT RKTVDHQQLA LNYERSFAAG TWQSTVYSGT
RRVIQYQSIP VAVQANPSHS GGVIDFERRF HGIGNRWIQP FDLGASLLTL TAGLDYDQSR
DDRQGYENFV GSTLGVKGNL RRDERNEVSS LSPYLQAAWQ LGKLDLQAGL RHNQVKFEVD
DRFLSNGDDS GSVTYRELTP TLGASYALLP ELNLYASWGK GLETPTLNEL SYSGAGGGFG
FDLQPATSKQ LEIGLKARLA EATSLQLALF QIDTDDELVV ASASGGRTRF QNAAQTRRRG
VELAMESQLS ETLRATLAYT RIDAAYRQDF TSGGRLIEAG NRLPGIPAST LYGELAWQPR
EGFSTALEGL YRSKLYVEDS NAAKAAPSYA LFNWQARFEQ TLGALTFNQV LRIDNLLDRE
YIGSVIVGES NGRYYEPGPE RAWYVGAGVQ YRFD
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