Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2360 |
Symbol | |
ID | 5108202 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 2605166 |
End bp | 2606149 |
Gene Length | 984 bp |
Protein Length | 327 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640503602 |
Product | short chain dehydrogenase |
Protein accession | YP_001187850 |
Protein GI | 146307385 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.113129 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.00199253 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCTACAG CTCAACTGAA CGACTCGCTC GTGGTGATCA CCGGTGCATC GAGCGGCATT GGCCGTTGCG CCGCCCATGA ATTCGCCCGC CACGGGGCAC GCCTGGTGCT CGCCGCTCGC GATGCCCAAG CGCTTGCCGC CGTGGTCAGG GAGTGCGAGC AGCTTGGCGC GCAGGCGCTG GCAGTGCCCA CGGACGTCAC TCGCAACCAG GCCATGGAGC ACCTGGCCAA GCAGGCGGCA GACTTCGGCG CCGGGCGTAT CGATGTCTGG GTGAACAACG CCGGCGTCGG CGCCGTTGGC CGCTTCGAGG ACACGCCGCT GGCTGCTCAC GAACAGGTCG TGCAGACCGA CCTGCTCGGT TACCTGCGCG GCGCCTACGT CGTGCTGCCG TATTTCAAAG CGCAGAAATC GGGCGTATTG ATCAACACCC TGTCGCTCGG CAGCTGGGTC GCCCAACCCT ACGCCGCGGC CTATTCCGCG GCCAAGTACG GCCTGCGCGG ATTGACGGAA GCGCTGCGTG GCGAACTCAC GCCCTGGCCG AACATTCACG TCTGCGATCT CTACCCAGCC GTGATGGATA CCCCTGGCTT TCGCGATGGC GGCAACTTCA CCGGCCGGGC ACTGACCCCG CCACCGCCGC GCTACGATCC GCGCCTGGTC GCCGAAGCCA TGATCGAAGT CGTGCTCAAG CCCAGAGCCA GCAAAACGGT GGGCAGCACG GCCGCCCTGC TGCGGCTCGC CCATTTCCTG GTGCCCGGCT TTACCCAGCT TTCCGGCCTG ATCGTCGGAC GAGCCCTGAA GCGGGGACAG CGCGCCCGGC CTTCCAGCGG CAACCTCTTC CATCCGCCGT CTGGAGAACG ACGCATCGAC GGCGGCTGGC GCGAACCGGC CGGCGACAGC CAGATGCCCA GGCTGATGAC CGCAACGGCG GTGGTCCTGT TGCTCGGCTG GGGCCTGCTG CACTTGCGAA ACGAGTCGCG GTAA
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Protein sequence | MATAQLNDSL VVITGASSGI GRCAAHEFAR HGARLVLAAR DAQALAAVVR ECEQLGAQAL AVPTDVTRNQ AMEHLAKQAA DFGAGRIDVW VNNAGVGAVG RFEDTPLAAH EQVVQTDLLG YLRGAYVVLP YFKAQKSGVL INTLSLGSWV AQPYAAAYSA AKYGLRGLTE ALRGELTPWP NIHVCDLYPA VMDTPGFRDG GNFTGRALTP PPPRYDPRLV AEAMIEVVLK PRASKTVGST AALLRLAHFL VPGFTQLSGL IVGRALKRGQ RARPSSGNLF HPPSGERRID GGWREPAGDS QMPRLMTATA VVLLLGWGLL HLRNESR
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