| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2355 |
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| Symbol | |
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| ID | 5108197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2599851 |
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| End bp | 2601647 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640503597 |
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| Product | thiamine pyrophosphate protein |
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| Protein accession | YP_001187845 |
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| Protein GI | 146307380 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0320889 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.000848806 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCATGA CAGTCGGAGA TTTCATCGTC GAGCGGCTCT ATCAGTGGGG CGTACGGCGC
ATCTACGGCT ATCCCGGAGA TGGCATCAAC GGCGTGTTCG GCGCGCTCAA CCGGGCGGAC
GGCAAGATCA GGTTCATCCA GGCGCGCCAC GAGGAAATGG CCGCCTTCAT GGCCGCGGCC
GATGCCAAGT TCTCCGGCCA GCTGGGAGTC TGCATCGCCA CCTCCGGGCC GGGAGCCACC
CACCTGCTGA CCGGCCTGTA CGACGCGCGC ATGGACCACA TGCCGGTGCT CGCCATCACC
GGCCAGCAGG CGCGCACCGC GCTCGGTGGG CATTACCAGC AGGAACTGGA TCTGGTGTCG
GTGTTCAAGG ACGTCGCCGG CGCCTTCGTC CAGCAGGCCA GCGCGCCGGC GCAGGTACGC
CACCTGGTCG ACCGGGCGAT CCGCACCGCC ATCGGCGAGC GACGGGTGAC CGCGATCATC
CTGCCCAACG ACCTGCAGGA AGCCGAATAC ACGGAGCCGC CGCACAAGCA CGGCACCGTG
CATAGCGGCA TCGGCTACAG CCGGCCAAGG GTGGTGCCCT ATGAAGCGGA TCTGCAACGC
GCCGCCGAGG TGCTCAATAG CGGCAAGAAG GTCGCCATGC TGGTCGGCGC CGGGGCGCTG
AATGCCGGCG ATGAGGTGTT CGAGGTGGCG CAGAAGCTTG GCGCCGGGGT GGCCAAGGCG
CTGCTGGGCA AGGCCGTGCT GCCCGACGAC CTGCCCTGGG TCACCGGCTC CATCGGCCTG
CTGGGCACGG TGCCGAGCTA CAAGATGATG GAGGAATGCG ACACCCTGCT GATGATCGGC
TCGGGTTTCC CCTACTCCGA GTTCCTGCCC CAGGAGGGCA AGGCCCGTGG CGTGCAGATC
GACATCCAGC CGGACATGCT CAGCCTGCGC TATCCGATGG AGGTCAACCT GGTCGGCGAC
GCCGCCGAAA CCCTGCGCGC CCTGCTGCCG CTGCTGGAGG ACAAGCAGGA GCGCAGCTGG
CGCGCCACCA TCGAGGACTG GCGCAGCGAC TGGGATCGAA CCCTGGAAAA ACGCGCCATG
GTCTCGGCCA AGCCGATCAA TCCGCAGCGG GTGGTCTACG AGCTGTCGCC GCGCCTGCCG
GAGCGCGCCA TCGTCACCTG CGACTCCGGC TCCTGCGCCA ACTGGTATGC CCGCGATCTG
AAGATCCGTC GCGGCATGAG CTGCTCGCTG TCCGGCGGCC TGGCCTCGAT GGGCGCGGCG
GTGCCCTATG CCATCGCCGC CAAGTTCGCC CATCCGGATC GCCCGGTGGT CGGCCTGGTG
GGCGACGGCG CCATGCAGAT GAGCAATCTG GCCGAGCTGA TCACCGTGGC CAAGTACTGG
CGCGAATGGG AAAACCCGCA GTGGGTGCTG GCGGTGTTCA ACAATCAGGA CCTCAACCAG
GTCACCTGGG AGCAACGGGT GATGGAGGGC GACCCGAAGT TCGAGGCCTC TCAGGACATC
CCCGATGTGC CCTACCACGC CTTCGCCAAC TCCATCGGCC TGACCGGCGT ATTGATCGAG
CGCGAGGAGG ATGTGGGTCC CGCCTGGGAG CAGGCGCTGG CCGCCGAGCG TCCGGTGCTG
CTGGAATTTC GCACCGATCC GGACGTGCCG CCGTTGCCGC CGCACATCAG CCTGGAGCAG
GCCAAGCAGT TCGCCTCCAC CCTGCTGCAG GGCGACCCCG ACCAGCGCGG CATCCTCGCG
CAGACCGCCA AGCAACTGTT CGGCGCGCTG CTGCCAGGCA AGCGCAAGGA CAACTGA
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| Protein sequence | MAMTVGDFIV ERLYQWGVRR IYGYPGDGIN GVFGALNRAD GKIRFIQARH EEMAAFMAAA
DAKFSGQLGV CIATSGPGAT HLLTGLYDAR MDHMPVLAIT GQQARTALGG HYQQELDLVS
VFKDVAGAFV QQASAPAQVR HLVDRAIRTA IGERRVTAII LPNDLQEAEY TEPPHKHGTV
HSGIGYSRPR VVPYEADLQR AAEVLNSGKK VAMLVGAGAL NAGDEVFEVA QKLGAGVAKA
LLGKAVLPDD LPWVTGSIGL LGTVPSYKMM EECDTLLMIG SGFPYSEFLP QEGKARGVQI
DIQPDMLSLR YPMEVNLVGD AAETLRALLP LLEDKQERSW RATIEDWRSD WDRTLEKRAM
VSAKPINPQR VVYELSPRLP ERAIVTCDSG SCANWYARDL KIRRGMSCSL SGGLASMGAA
VPYAIAAKFA HPDRPVVGLV GDGAMQMSNL AELITVAKYW REWENPQWVL AVFNNQDLNQ
VTWEQRVMEG DPKFEASQDI PDVPYHAFAN SIGLTGVLIE REEDVGPAWE QALAAERPVL
LEFRTDPDVP PLPPHISLEQ AKQFASTLLQ GDPDQRGILA QTAKQLFGAL LPGKRKDN
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