| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2296 |
|---|
| Symbol | |
|---|
| ID | 5108531 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 2534841 |
|---|
| End bp | 2535365 |
|---|
| Gene Length | 525 bp |
|---|
| Protein Length | 174 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640503538 |
|---|
| Product | MgtC/SapB transporter |
|---|
| Protein accession | YP_001187786 |
|---|
| Protein GI | 146307321 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1285] Uncharacterized membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.00897409 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.00000501406 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTAT TCGAGCGCAT TCTCATGACC CTGGTGGAGG AGTTCTCCGA TCTCGCCCAG
GTGGAACACA TTACCCGCGC CACGCTGCGC CTGGTCCTGG CCATGTTCCT CGGCGGGCTG
CTCGGCTATG AGCGCGAGGT CATGGGCAAG GCGGCCGGTC TGCGCACGCA CATGCTGGTG
TGCCTGGGGG CGGCGATCTT CGTCATGGCG CTGGAGCAGG ACGGCGCCGA AGCCGACGCC
ATGAGCCGGG TGATCCAGGG CATCGCGGCC GGTGTCGGTT TTCTCGGCGC CGGCACCATC
CTCAAGGGGC AGAACATCTC CGACGTCAAG GGCCTGACCA CTGCGGCCGG CCTGTGGGCC
TCGGCTGCCA TCGGCGTGGC GGTCGGTCTT GGCCGCGAGG CCACTGCCGT TCTGTCCACG
CTGATCGTGC TGGTGGTGCT GCACCTCATG CCGCTGATGG TCGAACCGGG TACCAGGAAC
CGGCCGGATG ACCAGGCCGA AGAGGAACCT GACGACAGGC GATAG
|
|---|
| Protein sequence | MDVFERILMT LVEEFSDLAQ VEHITRATLR LVLAMFLGGL LGYEREVMGK AAGLRTHMLV
CLGAAIFVMA LEQDGAEADA MSRVIQGIAA GVGFLGAGTI LKGQNISDVK GLTTAAGLWA
SAAIGVAVGL GREATAVLST LIVLVVLHLM PLMVEPGTRN RPDDQAEEEP DDRR
|
|---|
| |