Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2253 |
Symbol | |
ID | 5109197 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2482149 |
End bp | 2484056 |
Gene Length | 1908 bp |
Protein Length | 635 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640503496 |
Product | hypothetical protein |
Protein accession | YP_001187744 |
Protein GI | 146307279 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.000796594 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.115839 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGAAA AGATCTCGCG AGAGCGTATT GTTTTTGTTG GATTTGAAGT GGTTGACCCA TCATTGATGG ATGCATCTAG CAAGGATATA TTTCTTAGGC GAAGAGAGGC GATAAGATTA CGGCTTGACG GAAATACCGG AAAAGAGATC AGAAAAGTCA CTGGGATTCA AGAAAGTGAG GTCACTAGGC TATTTAAGCG ATATACCACG CTTAATGATA AAGGAATATA TTCAGGGGAG GCTGGATTAA TACCTGGATA TCGAATCAAC CCATACCAAC GAGTTAAGCC GCCAGAAGCA AAAGCCAGTG AGGGTCAAGG CGGTCTCTCT GGGGTGCTTA GTTATACCTT GGCCAAATAT CCTGGATTGG TGGTGAAGTT CGAGTCAGAA GTACTCCGAA GATCGATAAA ATTCGGGCAT GGAGCAAAAT TTAGAAAAAA AGGGCTATGC CAAGTTTTTT ATGACATTTG TAAGTCTGAG GGTGTTGGGA GCGGGGAGTG GCCATTGAAC CAGCCTCGTG GCGCTCGAAA GACCATAGGA AAATATATCG ACGAAATTCT TAATAATGAC TTCAGCAGAG CCGCTCTCGT AAGCGGCGGA AGGGTCGCGT TAACTCATAG CAAGGTTGGA ACGGGTTTTA TTCCATTGCT AGAAGATTTT GATGTCTATG ACTTTATTGA GATTGACTCC TGGCACATGG ACGCTTTTTT TGTACTCAAT ATCAGTGGTG ATAAGAGGGT TAAAACTAAA GATGTAATTA GCAGAATCTG GATGATTGCG GCTGTTTGCC GTCGAAGCAA TGCAGTCCTC GCTATAAAGT TTGTTTTTTC AAGCGAAATT AGATCGCAGG ATCTAATGGA TCTAATTTGT GATGCTTATG CCGGAACGTG GTCGCCCCGC ACAGCTCTTA ATGTTCGTGA TTTAAAATAC ACTGCCTCAG CTGGAATGCC ATGCTATTCA GTTCCTGCTC TACGCCATCA TAGCTGGGGA GCTGTATGTT TAGATAATGC TATGCAGCAC CATGCAACTA AGATTTATGA GTTGGCCCTC CATACATTAG GCTTTGCTAT AAATTACGGC CCGTTAGAGC AGCCTGCGCG AAGGTCAAAA GTAGAGGGGC TGTTTAGGCG AATAGCAACA AACGTGATCC ATCAAATTTC ATCCACTACT GGAAGTAGCC CTCAAGATGG TAGGGCTGAA TCGCCAGAAA AAGCCGCCGT ATATTACCAG ATTGATGTAG ATGATGCTCT GGAAGTTATG GATGTGTTTG CCGCAAATTA TAATGGAATA CCTCAAGGTG GACTAAATAA GGCAAGTAGC CCGCTTGAGA TACTGTGTGC TTACAGTCTG GACAAGGAGG TGATTCTGCC AAAGAGCAAT GAGATTTACC TGAATAGCAT TTGTTTAGGA AGTTCTACCG TTCAAGCAAG GGTTACAGGA AACGTAGCTA AAGGTATAAG ACCTAGAATA AAGCTTGATC AAGCCCTTTA TACCTCCCCA GATCTGGCTA ATTCCCCGCA TTTAATCGGG ACGAGTCTGC TTGTGCGTAT TAACCCTCAC GACTATCGAA CTGTAGAGGC TTACCTGCCT GAAGGGATTT ACTTCGGAAT TCTCAACGTC GAGGCTGCTT GGAGAAATAT CAAGCATAGT GTCACTACTC GTCGCCTGGT TAATAGAGCT CAAGCAAAAA AAGAGTTCGA AATAATGGAG GGTGAGAACC CCATACTAGC CTGGAAGAGA CACCTTATAG CTAATTCTAG CGTCAAAAAT AATTTGGAAT TAGCGCGACT CAATGGTGAC TTAGAAAGCA AATCTGTGCG TACGCAGTTC GAGCCGTCCG ACGAAATACC GGATCATACG AGAAAAAGCA CATCTGAGCG ATGGAAGAAT CTAGACATTT TAAGGTGA
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Protein sequence | MSEKISRERI VFVGFEVVDP SLMDASSKDI FLRRREAIRL RLDGNTGKEI RKVTGIQESE VTRLFKRYTT LNDKGIYSGE AGLIPGYRIN PYQRVKPPEA KASEGQGGLS GVLSYTLAKY PGLVVKFESE VLRRSIKFGH GAKFRKKGLC QVFYDICKSE GVGSGEWPLN QPRGARKTIG KYIDEILNND FSRAALVSGG RVALTHSKVG TGFIPLLEDF DVYDFIEIDS WHMDAFFVLN ISGDKRVKTK DVISRIWMIA AVCRRSNAVL AIKFVFSSEI RSQDLMDLIC DAYAGTWSPR TALNVRDLKY TASAGMPCYS VPALRHHSWG AVCLDNAMQH HATKIYELAL HTLGFAINYG PLEQPARRSK VEGLFRRIAT NVIHQISSTT GSSPQDGRAE SPEKAAVYYQ IDVDDALEVM DVFAANYNGI PQGGLNKASS PLEILCAYSL DKEVILPKSN EIYLNSICLG SSTVQARVTG NVAKGIRPRI KLDQALYTSP DLANSPHLIG TSLLVRINPH DYRTVEAYLP EGIYFGILNV EAAWRNIKHS VTTRRLVNRA QAKKEFEIME GENPILAWKR HLIANSSVKN NLELARLNGD LESKSVRTQF EPSDEIPDHT RKSTSERWKN LDILR
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