| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2060 |
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| Symbol | |
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| ID | 5109794 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2279579 |
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| End bp | 2281426 |
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| Gene Length | 1848 bp |
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| Protein Length | 615 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640503304 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001187553 |
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| Protein GI | 146307088 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.163136 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.391933 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCACC CGCTGCGCAG TATCCTGCTC CACGGTAGCA GCCTCATCCT GCTCGGCCTG
GCCGGCCTCG CCCTCGCCGC CCCCAAGCAC GCCGCCACCC TCTATGATGA ACCGCCGAAG
TATCCCGCCG ACTTCCAGCA CTTCGAATAC GCCAACCCCG ATGCACCGAA AGGTGGCATT
TTCCGCCAGG CCGGCTTCGG CAGCTTCGAC AGCCTCAACC CCTTCATCAG CAAGGGCGTG
TCCGCTACCG ACATCGGCCT GATCTACGAC ACCCTCACCG TGCAGAGCCT GGACGAACCC
TTCACCAGCT ATGGCCTGCT CGCCGAGAAG ATCGAGAAGG CACCGGACAA CGCCTGGGTG
CGTTTCCTGC TGCGCAAGGA AGCGCGCTTT CACGATGGCG AGCCCGTCAC CGCCGAGGAC
GTCAAGTTCA CCTTCGACAT CCTGATGGAG AAAGGCGCGC CCATGTACCG CGGCTACTAC
GCCGACGTCG AGCGCGTCGA GGTGGAGTCG CCGCACAGCG TGCGCTTCAT CTTCAGGCAC
GCCGGCAACC GCGAATTGCC CCTGATCGTC GGCCAGCTGC CAGTGCTGCC CAAGCACTGG
TGGGCCGAAC GCGACTTCAG CCGCAGCAAT CTGGAAGTGC CGCTGGGCAG CGGTCCCTAC
CGAGTCGGCC GCGTGCAGGC CGGGCGCAGC ATCCGCTATG AGCGCGTCAA GGACTGGTGG
GCCAAGGACC TGCCCGTGAG CCGCGGTTTC TACAACTTCG ACCAGATGCA GGTCGATTAC
TACCGCGACA ACACCGTGGC CCTGGAAGCG CTCAAGGCCG GGCAGTTCGA TTACTGGCTG
GAAACCAGTG CGAAGAACTG GGCGACTGCC TACAGCATCC CCGCCGTCGC CAACGGTCAG
CTGATCAAGG AAGAGATCCA GAATCGCAAC CCGACCGGCA TGCAGGGCTT CATCTTCAAC
ACCCGCCGCC CGCAGTTCCA GGACCGCCGC GTACGCGAGG CCCTGGGCCT GCTGTTCGAC
TTCGAATGGG CCAACAAGCG CCTGTTCAAC GGCGCCTACA TTCGCACCCG CAGCTATTTC
GACAACTCTG AACTGGGCTC GCAGGGCCTG CCCGGTGAAG ACGAGCTGGC GATTCTCGAG
CCGCTACGGG GCAAGATTCC GGCCGAAGTG TTCAGCGAAG AGTTCCGCGT ACCGGTCACC
GACGGCAGCG GCATCATCCG CGAACAGCAG CGCCGCGCCT ATCAGCTTTT GCAGCAGGCC
GGCTGGCGCA TCGAGGGCGA CCGCATGCTC GACGCAGGCG GCCAGCCGGT GAGCTTCGAG
TTCCTCCTGG CGCAGACCGA GTTCGAGCGC GTTCTGCTGC CATTCAAGCG CAACCTGGCC
GACCTCGGCA TGGAGCTGGT GATTCGCCGC GTCGACGTCT CGCAGTACAT CAACCGTCTG
CGCTCGCGCG ACTTCGACAT GATCGTCGGC GGCTTCGGTC AATCCAACTC GCCGGGTAAC
GAGCAGCGCG AATACTGGCA CTCCTCCAGC GCCGACAATC CCGGCAGCCG CAACTACATC
GGCCTCAAGG ACCCGGCCAT CGACCAGCTC GTCGAAGGTC TGATCAACGC CGATTCGCGG
CAAAGCCTGA TCGCCCATAC CCGCGCCCTC GACCGTGTCC TGCTGTGGGG CCATTACGTG
ATCCCCAACT GGCACATCAA GACCTGGCGC GTCGCCTACT GGAACCGCTT CGAGCATCCC
AAGGTAACGC CGCTGTACGA CATCGGCCTG CACACCTGGT GGGTACGCCC GGGCCTCGAG
CAGCCCAGCG CAGCGCAGCG GCAAGCGGCC GAACAGGCGG AGCAATAA
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| Protein sequence | MIHPLRSILL HGSSLILLGL AGLALAAPKH AATLYDEPPK YPADFQHFEY ANPDAPKGGI
FRQAGFGSFD SLNPFISKGV SATDIGLIYD TLTVQSLDEP FTSYGLLAEK IEKAPDNAWV
RFLLRKEARF HDGEPVTAED VKFTFDILME KGAPMYRGYY ADVERVEVES PHSVRFIFRH
AGNRELPLIV GQLPVLPKHW WAERDFSRSN LEVPLGSGPY RVGRVQAGRS IRYERVKDWW
AKDLPVSRGF YNFDQMQVDY YRDNTVALEA LKAGQFDYWL ETSAKNWATA YSIPAVANGQ
LIKEEIQNRN PTGMQGFIFN TRRPQFQDRR VREALGLLFD FEWANKRLFN GAYIRTRSYF
DNSELGSQGL PGEDELAILE PLRGKIPAEV FSEEFRVPVT DGSGIIREQQ RRAYQLLQQA
GWRIEGDRML DAGGQPVSFE FLLAQTEFER VLLPFKRNLA DLGMELVIRR VDVSQYINRL
RSRDFDMIVG GFGQSNSPGN EQREYWHSSS ADNPGSRNYI GLKDPAIDQL VEGLINADSR
QSLIAHTRAL DRVLLWGHYV IPNWHIKTWR VAYWNRFEHP KVTPLYDIGL HTWWVRPGLE
QPSAAQRQAA EQAEQ
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