Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2028 |
Symbol | |
ID | 5109919 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2239749 |
End bp | 2241704 |
Gene Length | 1956 bp |
Protein Length | 651 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640503269 |
Product | acetoacetyl-CoA synthetase |
Protein accession | YP_001187521 |
Protein GI | 146307056 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
TIGRFAM ID | [TIGR01217] acetoacetyl-CoA synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.720983 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.488067 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCAGC CCCTCTGGAC GCCCTCCGCC GAGCGTATCG CCGCCACCCG CCTGGATGCC TTCCGCCGCC TGATCAACAG GCGCCACGGC CTCGACCTGG CCGACTACCC GGCCCTGCAC GCCTGGAGCG TCGAACAGCG CGAAGCCTTC TGGCAGGCCA TCGTCGATTT TTTCGAGATC CGCCTCAGCA CGCCCGCCGA GCGGGTACTG CGCGAGGGCC CGGCCATGCC CGACGCCGAC TGGTTCCCCG GCGCCCGGCT GAATTTTGCC GAACACCTGC TGCGCCGCCG CGACCCGCAT CCGGCGCTGG TGGCCGTGGG CGAAGACGGC AGCCGCGAGC AGCTCAGCTA CCTGGAACTG GCCGGGCATG TCGCCGGCCT GCAGCGTAGC CTGCGCGAGG CCGGCGTGGG CGTCGGCGAC CGGGTCGCGG CCTTTATGCC CAACACCTGG CAGACCGTGG TCGGCATGCT CGCCGCCACC AGCCTCGGCG CCACCTGGTC GTCCTGTTCG CCGGACTTCG GCACCCAGGG GGTGATCGAC CGCTTCGGCC AGATCGAGCC CAAGGTGCTG ATCGCCGCTG CCGGATACCG TTACGCCGGC AAGAACCTGG ACCTGACCGC CAAGCTGGGT GAGATCCTCG AACGCCTGCC GAGCCTGGAG CAACTCGTCG TCGTGCCCTA CTCCCGGCCC GAGGCGAAGC CCGCCGACTT CATCACCCAG GCCCGCGTGG CGCTATGGCA AGACTTCTAC CAGCCCGGCG GCGAGCCCGA ATTCACTGCC GTGCCCTTCG ATCAGCCGCT ATACATCCTC TACTCCAGCG GCACCACCGG CGTGCCCAAG TGCATCGTCC ACGGCGTTGG CGGCACCCTG CTGCAGCACG TCAAGGAACT CGGCCTGCAC ACCGACCTGA CGGCCGATGA CTGCCTGTTC TACTACACCA CCTGCGGCTG GATGATGTGG AACTGGCTGG TCTCCGGCCT GGCCCTGGGG GCCACCCTGG TGCTGTTCGA CGGCTCGCCC TTCCATCCGG GGCCCGAACG CCTGATCGAT CTGATCGACG CCGAGGGCAT CAGCATCTTC GGCACCAGCG CCAAGTACCT CGCCGCGCTG GAAAAGGCCG GCGCCAAGCC GTGCGAAACG CACAAATTGC AACGCCTGAA AGCGCTTCTC TCCACCGGTT CGCCACTGGC CCACGAGAGC TTCGACTTCG TCTACCAGGG CATCAAGGCC GATCTGTGCC TGTCGTCCAT CTCCGGCGGC ACCGATATCG TCTCCTGCTT CACCCTCGGC AACCCGGTGC TGCCGGTGTG GCGCGGCGAG CTGCAGTGCA AGGGCCTGGG CATGGACGTG CAGGTATGGA ACGACAGTGG CCAGCCGGTG ACCGGCGAGA AAGGCGAACT GGTCTGCGCC CGGCACTTTC CCTCGATGCC GCTGGGCTTC TGGAACGACG AAGGCGGCGA GAAATTCCGC GCCGCCTATT TCGACACCTT CCCCGGCGTC TGGGCCCATG GCGACTACGC CGAGGAAACC GTGCACGGCG GCCTGGTGAT CCACGGCCGC TCCGACGCGG TGCTGAATCC GGGCGGCGTG CGCATCGGTA CCGCGGAGAT CTACCGCCAG GTGGAAAAGG TACCGCAGGT GCTGGAATCC CTCGCCATCG GCCAGGACTG GGCTGGCGAC GTGCGCGTGG TGCTGTTCGT CCGCCTGCGC GAGGGCGTGG TGCTGGACGA GGCGCTGGAA CGCAAGATCC GCCAGGTGAT CCGCGCCAAC ACCACCGCCC GTCACGTGCC GGCGAAGATC GTCGCGGTGG CCGATATCCC ACGTACCATC AGCGGCAAGC TGGTGGAACT GGCGGTGCGC AACGTGGTGC ATGGCCGCCC GGTGAAGAAC ACCGACGCCC TGGCCAACCC GCAGGCGCTG GAGCTGTTCA GGGATCTGCC GCAACTGCGT GAGTGA
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Protein sequence | MQQPLWTPSA ERIAATRLDA FRRLINRRHG LDLADYPALH AWSVEQREAF WQAIVDFFEI RLSTPAERVL REGPAMPDAD WFPGARLNFA EHLLRRRDPH PALVAVGEDG SREQLSYLEL AGHVAGLQRS LREAGVGVGD RVAAFMPNTW QTVVGMLAAT SLGATWSSCS PDFGTQGVID RFGQIEPKVL IAAAGYRYAG KNLDLTAKLG EILERLPSLE QLVVVPYSRP EAKPADFITQ ARVALWQDFY QPGGEPEFTA VPFDQPLYIL YSSGTTGVPK CIVHGVGGTL LQHVKELGLH TDLTADDCLF YYTTCGWMMW NWLVSGLALG ATLVLFDGSP FHPGPERLID LIDAEGISIF GTSAKYLAAL EKAGAKPCET HKLQRLKALL STGSPLAHES FDFVYQGIKA DLCLSSISGG TDIVSCFTLG NPVLPVWRGE LQCKGLGMDV QVWNDSGQPV TGEKGELVCA RHFPSMPLGF WNDEGGEKFR AAYFDTFPGV WAHGDYAEET VHGGLVIHGR SDAVLNPGGV RIGTAEIYRQ VEKVPQVLES LAIGQDWAGD VRVVLFVRLR EGVVLDEALE RKIRQVIRAN TTARHVPAKI VAVADIPRTI SGKLVELAVR NVVHGRPVKN TDALANPQAL ELFRDLPQLR E
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