Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2027 |
Symbol | |
ID | 5109918 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2238929 |
End bp | 2239756 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640503268 |
Product | amino acid ABC transporter periplasmic protein |
Protein accession | YP_001187520 |
Protein GI | 146307055 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.360228 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTGAAG CTTGCGCAAC GTCAAGCCGC ACCGCCGCCG TGGCGGCTTA TACTCAAGCA CGATCGTGCC GCTGGAAGCT CGCCGTGCCG TTACGTCAAT TCTGTTGTTG CGCTCTGCTC TGCCTGGCCT TTGCCAGTCA GGCGGAAGAC GTCATCGAGC TGTACATGCC CAACGCGCCA CCTCTGACCT TCGCCAGTTT GAAAGGCGGT CATGGCATGG TCGGCGATGT GACGCTCGCC GCTCTGGCCC GCGCCGGCCT GCTCAGCGAA CTGCGCTACG AGCCCTGGGC ACGCGCCCAG CGCAAGGTGG CCAACGGCCG CGACCAGCTG ATCATTCCCC TGTCGCGTAC CCCCGAACGC GAGCCGCTGT ACACCTGGAT AGCACCCATC ATGCCGCTGG AGCGCGCCTT CTTCAGCCTC GACGAGCCAG TGCAGAGCTT CGCCGAAGCG CGCCAGCGCT ACCGGCGCAT CGGCGTCGGC CTGGGCACGG CGCAGGTGGA GATTCTCAGA AGCCAGGGTT TCAGCGAGCA GCAGATCATC ACCCATACGC TGGGTGAAAA CCCCGCCCAT CTGCTGGAGC GGGGGCGTAT CGACGCCTGG TTCACCGGCG TGCCGGAGGC GCTCTACATA TGGCCGCAAC ACTCCACGCG CAGGCTGCAG ATGAGCCCGG TACTGGCCAG CACCAATCTC TATCTGGCCT GTTCGAAGGA GTGCGATGCG CAACTGGTGC AGAAACTGCG TGCCGCCGTG CAAAGCGTGC ATGACGAAGG CATCAGCAAG CGCCTGATCG AGCTCTATCT GCCGCAGCCA CTCGACGCCG CGCCCTAG
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Protein sequence | MSEACATSSR TAAVAAYTQA RSCRWKLAVP LRQFCCCALL CLAFASQAED VIELYMPNAP PLTFASLKGG HGMVGDVTLA ALARAGLLSE LRYEPWARAQ RKVANGRDQL IIPLSRTPER EPLYTWIAPI MPLERAFFSL DEPVQSFAEA RQRYRRIGVG LGTAQVEILR SQGFSEQQII THTLGENPAH LLERGRIDAW FTGVPEALYI WPQHSTRRLQ MSPVLASTNL YLACSKECDA QLVQKLRAAV QSVHDEGISK RLIELYLPQP LDAAP
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