Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1815 |
Symbol | |
ID | 5109945 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 2003171 |
End bp | 2005249 |
Gene Length | 2079 bp |
Protein Length | 692 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640503047 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_001187311 |
Protein GI | 146306846 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3170] Tfp pilus assembly protein FimV |
TIGRFAM ID | [TIGR03504] FimV C-terminal domain [TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGGGTT TGGCGTCGGG TTCTGCGCTC TATTCGGGCA TGGCGCCGGC GCTCGGGTTG GGTGAGATCA CCCTGCATTC GGCGTTGAAT CAGCCTTTCG AAGCCGAGAT CGAGTTGCTT GAGGTCGGCG ATCTCGGTGC GCAGGATCTG CGCGTGGGGC TGGCACCGGC CGAAGTCTTC AGTCGCTCGG GTGTCGAGCG CTTCTATTTT CTCAACGACC TGCGTTTCAC GCCGTTGCTG CGCGGCACGC GCAGCGTGAT CCGGGTGGTT TCCAGTCGCC CGGTACGTGA GCCCTATCTG AATTTCATCG TCGAAGTGGC GCGCCCGGGG GGTCAGCTGC TGCGCGAGTA CACCGTGCTG CTCGATCCGC CGGGCTCGTC TGCCTACACC GCCGTGGCGG CCTCCAACGC AGCGGCGCCC ACGCAGTCAA GCAGTGCTGC AGCGCCGGCT GCTGCCCCGA TCAGAAGCGT CGCTGCCCCC AGCGCTGCGC AAGGGCATCG CCATCAGGTG GTTCGTGGCG ACAGCCTGTG GTCGATTGCG GCTCGACTCC GCGAGCAGGG CAGTACGCTG TCGCAGCAGG CGCTGATGGA GGGCATCCTC GCCCTCAATC CGAGCGCCTT CGCAGGAGGC GATCCCAGCC GCCTGCAGGC CGGCGCACAG CTGTTGCTGC CCGATGCCGC CCGTGCGAGC GCAGCAGCCC CGGTTGCTGC CCAAGCCCCT GCCGCGGCGG AGCCGGTGGT CGAGCCTGCA AATGCACCGC TGGCGGCGCA GGAGTCGGCT CCAGAACAGA CGGAAAGCCT GCAGCAGTTG CTCGAGAGAC AGCGCCAGGT CGATCTGGAA CTGGCCAACC AGGCCGCCGA GAACCTGCAG CTGCAGCAGG GCCTGGCGCA ACTGCAACTG CAGCTGCAGC AACTGCAGGA ACAACTGGTA CAGAAGGACG CGCAACTGGC CGAGCTGACG CAGCAGAGCA GCGCCGCCGC AGCACCGGCG CAACCGCCTG CTGTCGTCAC CGAACCCGTT TCGCAGCCCG CGGCCGCCGA GCGTAGCGGA TTCTCCCTGT TGCTGGCCGG GGGCGCGGCG TTGTTGCTGT TGTTGCTCGG CGCCATGCTC TGGGCCGCGC GCCGACGCGA CAGGGCCGGG CCGGTGGTTC AGGTGCAGCC CAAGGCGCAG CGACAGGCCC CGGCACCCCA GGCGCGGGCC GCGGCCGTTG CGACGCCTGA GCCGGAGTCG GAACCTGAGC CGGTGGCGAT GGTTGCGCCT GTTGCCAGGC CGGCGCCCGC TGTGCAGCGG GCGCCGGGCC CGGTCGATCC GCTGGAGGCG GCCAATGTCT ACATTGCCTA TGGCCGCATC AACGAGGCGC GTGGCGAGCT GAGCAAGGCG CTGACCCTGG AGCCGCAGCG CAGCGATCTG CGTTTTCGCC TGCTGGAGGT GCTGGCGCAG CTCGGCGATG GCGCAGGCTT TGCCCGCGAG GAGGCCGTGC TGCGTGCCGA AGGTTTCGAC GAGGCGCGCA TCGATGCGCT CAAGGCTCGC CATCCCGGCT TGCACCATGC GGAGCCTTTC CAGGCCAGCG AGCCCGAGGT GCAGCAGCCA CTGGCCCAGG CGCAGCCCGT TGCCGAGCCC GATTTCCAGC TCAACCTCGA CGACCTGTCG CTGGATGCCG ACTGGGACCT GGTCAGCCCG TTCCCTGCGG CGCGCAGCAA GCCCAAGGCC GCTGCCCAGC CCGAGTTCGA TCCGTCTTTC TCCAGCAATC TGCAGGAGTT GCCGGAGGTG TTCGAGATGC CCGACGAAGG CGGTGGTCTC AGCGCCTTCG GCGAGATGGA GATGGTGCTC ACGGATGAGG CGTTGGACGA CAACTTCCTC GACGCCTTCG CCGGTGAAGC CGATGCCACC GCGGCCCTGC AGGGCGACAT CGACCAGTTG GCGGGCAATC CCGAGCACAT GGCCAAGCTC AACCAGGCTC TGGCCTACAT CCAGCAGGGC GATCTGGCCA CTGCCTGCGA CATCCTCAAC GAAGTGATCG ATCAGGGTGA TGACGAGCAG AAGCGGGCCG CGCGCCAGCT CCTGGCAGAA ATCGCCTGA
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Protein sequence | MLGLASGSAL YSGMAPALGL GEITLHSALN QPFEAEIELL EVGDLGAQDL RVGLAPAEVF SRSGVERFYF LNDLRFTPLL RGTRSVIRVV SSRPVREPYL NFIVEVARPG GQLLREYTVL LDPPGSSAYT AVAASNAAAP TQSSSAAAPA AAPIRSVAAP SAAQGHRHQV VRGDSLWSIA ARLREQGSTL SQQALMEGIL ALNPSAFAGG DPSRLQAGAQ LLLPDAARAS AAAPVAAQAP AAAEPVVEPA NAPLAAQESA PEQTESLQQL LERQRQVDLE LANQAAENLQ LQQGLAQLQL QLQQLQEQLV QKDAQLAELT QQSSAAAAPA QPPAVVTEPV SQPAAAERSG FSLLLAGGAA LLLLLLGAML WAARRRDRAG PVVQVQPKAQ RQAPAPQARA AAVATPEPES EPEPVAMVAP VARPAPAVQR APGPVDPLEA ANVYIAYGRI NEARGELSKA LTLEPQRSDL RFRLLEVLAQ LGDGAGFARE EAVLRAEGFD EARIDALKAR HPGLHHAEPF QASEPEVQQP LAQAQPVAEP DFQLNLDDLS LDADWDLVSP FPAARSKPKA AAQPEFDPSF SSNLQELPEV FEMPDEGGGL SAFGEMEMVL TDEALDDNFL DAFAGEADAT AALQGDIDQL AGNPEHMAKL NQALAYIQQG DLATACDILN EVIDQGDDEQ KRAARQLLAE IA
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