| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1813 |
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| Symbol | |
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| ID | 5109943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2001127 |
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| End bp | 2002287 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640503045 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001187309 |
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| Protein GI | 146306844 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.730077 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGCACTT ATCACGCCTG GCTAGATGAC GTTCGCCCCA GCCCCTATGC CGACCAGCTC
AGCCTGGGGT TCCGCTGGCT GCGCTTCTCC CGTGTACTGG AGCGCGAGTA CCGCACCCAC
TTGCTGGACG AGAGCTTCGA GCTCAAGCGC ATCGCGCTCA GCACGGCGAT GGTCATCTGG
CTGGCCCTCG CCGCGCTGGA CCTGATGCTG GTGCAGCCGC CCCATCTGGG GTGGATTCTG
GCCGTGCGTG TGCTGGTGCT GGTCATTCTG GTGGGCTGTG GCGGCCTGAT CCTGCAGCGC
CGGCACATCC GCCTGCTCTT GCCGTTGAGC ATGGCCTGCA TCCTCGCCCT GGGTATTGGG
GCTGCGGTGA TCGTCGGCAT CGCCCATGAC GCCGACCCCA GCTATCCGTA CGAGGGGCTG
CTGCTGGTGA GCATGGCCGC CTATTTCCTC GTCGGCCTGC GCCTGAGCGA GGCGCTCGGC
TGTGCCCTGG CGGTACTGCT GGCCTACATC GGTGCCGAGT GGCTTGCCGG CCTGCCGCTA
CCGCGGTTGA TCAACAATGT GCTGTTCCTG CTGTTCGGCA ACCTGATCGG GGCGGTGGGC
TGCTACCTGC TCGAATACAA GTCGCGCGAG TACTTTCTCA TCAGCCGGCT GATGCGCCTG
CTGGCCGACC GCGACAGCCT CACCGGCCTG CACAACCGGC GCAGCTTCAA CCGCCAGTTC
GAGCGTCTGT GGCGCCAGGC GCAGCGCGAT GGGCAGTCGC TGGCACTGCT GCTCTGCGAT
ATCGACCACT TCAAGGCTTA CAACGATCAC TATGGCCATC AGGCCGGTGA CACCGCGCTG
CAGCGGGTGG GGGCGCTGAT CGAGCAGGCC GCCCGGCGCC CGCTGGACAT GGGGGTGCGC
CTGGGCGGCG AGGAGTTTGC CCTGCTGTTG TTCGATATTG GTCCCGACGA GGCCAGGCAG
CGCGCCGAGG CGTTGCGTCA GGCACTGGAG GCGGCCGGGA TTCCGCACCA GAGTTCCGAC
AGCGCGGCGG TGCTGACCAT GTCCATCGGC GTCGCCTGCC TCAGCCCCGG CACCGAGGGC
GAGTTGAGCC AGATCTACGA GCAGGCGGAC CGTGCGCTGT ACGAGGCCAA GGCGTTCGGG
CGCAACCAGG TGGCGGCCTG A
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| Protein sequence | MRTYHAWLDD VRPSPYADQL SLGFRWLRFS RVLEREYRTH LLDESFELKR IALSTAMVIW
LALAALDLML VQPPHLGWIL AVRVLVLVIL VGCGGLILQR RHIRLLLPLS MACILALGIG
AAVIVGIAHD ADPSYPYEGL LLVSMAAYFL VGLRLSEALG CALAVLLAYI GAEWLAGLPL
PRLINNVLFL LFGNLIGAVG CYLLEYKSRE YFLISRLMRL LADRDSLTGL HNRRSFNRQF
ERLWRQAQRD GQSLALLLCD IDHFKAYNDH YGHQAGDTAL QRVGALIEQA ARRPLDMGVR
LGGEEFALLL FDIGPDEARQ RAEALRQALE AAGIPHQSSD SAAVLTMSIG VACLSPGTEG
ELSQIYEQAD RALYEAKAFG RNQVAA
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