| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1798 |
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| Symbol | |
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| ID | 5109928 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1973972 |
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| End bp | 1975534 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640503030 |
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| Product | diguanylate phosphodiesterase |
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| Protein accession | YP_001187294 |
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| Protein GI | 146306829 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.199517 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.66089 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCATTAA CCGCTTACCG CACCCGTCGT TCCCGATTGC GACTGTGCGC CTCTCTTGCC
GTGGGGATGC TGCCGGTCGT GCTCGGCCTG ATGTTTCTGT ACGCGCAGGC CGGAATCGTG
CTGCGCGACA TCAGCCGCAC CAGCGCCGCC GACGCCGTGC GCCAGATCGA CCTGATGCTC
GACAATGCCA GCCAGGCTGC CGGCGAGGTA TTGCCGCAGG TCGGCAGACC CTGCGCGGAG
GTCGAGCTGG TGCTGCGCGA GCAGGTCGCC ACCGTGCCCT TCGTGCGCTC GGTCAACCTG
ATGGATGGGG GGCGGCTGTA CTGCTCATCG CTGTTTGGCG CGTTCGAGGA GCCGGTCGAC
TCTGCTGCCT ACGTAGCGGG CCGGCTGCGG CTGCTGGCGG GCAACCCGGT CACCCCGAAT
CATTCGTTGC TGGTGTATCG CGATGTCGTG GACGAGCGCG GCGCGCTGGT GGCGATCGAC
GGACGTTACC TGGCCAACGT GCTGCAGTCG GTGGATCGCG GTGCCTTCAT GCAATTGCTG
GTGGGGGAGC AGTGGATGCC GCGCAGCGGA TTGGTGCGAG CGGGGCGCCT GCCCGAATAC
CCCTTGGCTC GGGTCGCGCT GAGTTCGACG CGCTATCCCT ATCAGGTGCG TGCGGCGTTT
CCCCGAGGCG CGCGGCTGCG CTACATGGGC GAGCAATATC CGGTGCTGTT CGTGCTGCTG
GGGCTGCTCG GGGCACTGGC CGGCGTGGGC AGCCACTGGC TGCTGGCGCG CTCCAGCTCC
CCCAGCCTCG AGTTGCGTCG TGCGCTGCAG GCCGGAGAAT TCATTCCCTA TTTCCAGCCG
CTGGTGCGCA GCGGTACGCA GCAGTGGATA GGCGCCGAGG TGCTGATGCG CTGGCAGCAC
CCGCGCGAGG GGCTAGTGCG CCCGGATCTG TTCATTCCCT TGGCGGAAAG CTCCGGCCTG
ATCGTGCCGA TGACCCGGGA ATTGATGCGG CAGACGGCGG AGCTGCTGGC GCCGGTGGCG
GATCGACTCG GCGGCGGGTT TCATGTCGGC ATCAACATCG CAGCCGCACA TTGCCGCAGC
CGCGAGCTGG TCGAGGACTG CCGCAACTTT CTCCAAGCCT TCGAACCGGG ACAGGTGGTG
CTGAGCCTGG AACTTACCGA GCGCGAACTG CTGGAGCCGG ATGCCTTCAC CGATCAGCTG
TTCGCCGACC TGCACGAGAT GGGCGTGAAG ATCGCACTGG ACGACTTCGG CACCGGCCAT
TCCAGCCTGA GTTACCTGCA CAAGCTCAAG GTGGACTACC TGAAGATCGA CCAGAGTTTC
GTCGCCATGA TCGGCAAGGA CGCCCTGTCG CTGCACATTC TCGACAGCGT GATCGACCTG
TGCGCCAAGC TGCAGCTGGA GGTGATCGCC GAAGGTGTGG AGGACGAGCT GCAGCTGCGC
TACCTGGGCA ATCGCCGCGT GGACTATCTG CAGGGCTACC TGTTCGGTCG GCCCTTGCCG
GCGGCGGAAT TCGTCGCCTG CGCGCTGGAC GAGCCGGCTG CTTCCGTGCA GCTGCCAGGG
TAG
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| Protein sequence | MPLTAYRTRR SRLRLCASLA VGMLPVVLGL MFLYAQAGIV LRDISRTSAA DAVRQIDLML
DNASQAAGEV LPQVGRPCAE VELVLREQVA TVPFVRSVNL MDGGRLYCSS LFGAFEEPVD
SAAYVAGRLR LLAGNPVTPN HSLLVYRDVV DERGALVAID GRYLANVLQS VDRGAFMQLL
VGEQWMPRSG LVRAGRLPEY PLARVALSST RYPYQVRAAF PRGARLRYMG EQYPVLFVLL
GLLGALAGVG SHWLLARSSS PSLELRRALQ AGEFIPYFQP LVRSGTQQWI GAEVLMRWQH
PREGLVRPDL FIPLAESSGL IVPMTRELMR QTAELLAPVA DRLGGGFHVG INIAAAHCRS
RELVEDCRNF LQAFEPGQVV LSLELTEREL LEPDAFTDQL FADLHEMGVK IALDDFGTGH
SSLSYLHKLK VDYLKIDQSF VAMIGKDALS LHILDSVIDL CAKLQLEVIA EGVEDELQLR
YLGNRRVDYL QGYLFGRPLP AAEFVACALD EPAASVQLPG
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