| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1711 |
|---|
| Symbol | |
|---|
| ID | 5109685 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 1880897 |
|---|
| End bp | 1884046 |
|---|
| Gene Length | 3150 bp |
|---|
| Protein Length | 1049 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640502940 |
|---|
| Product | bacteriophage N4 receptor, outer membrane subunit |
|---|
| Protein accession | YP_001187207 |
|---|
| Protein GI | 146306742 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.261559 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGGC TGTTCGGCTT TCCCCTGCTG GCCTGCCTGG TTGCATTCCC CGTCGCGGCT
GCCGAGCCGC TCAGCGGTTT TCAGCAGTTT CGTAGCTATC CCTTCCTCGA TCGTGCCTAC
CGTGAGGCCG GCCGCAACAA CTGGGGCGAA GTGGAGCGTC TGATGCGCCA TCTGCTTGAG
CGGGTGCCGC GTAGCGAAGA GGCTCGCCGT CTGCTCATGG AGGCGCTGAT CAAGCAGCGT
CGTTACGCGG AGGCCGAGGC GTTGAGCGCT GAGCTCGGCG AGGGCCACGA GGCCCTGCTG
GAGCTGCGCC TGGCCTGGAT CGAGCAGGAC CCGCCGACCG CCACGCAGGT CGAGCAGTGG
CTGCTGCACA GCGAAGGCGA TCAGCGTGTG CGCCTGTGGC AGGCCTACAG CCTCAGCCTG
GCCAAGTTTG GCGGCGCCAA GCGGGCGCTG GACTGGCTCA GTCAGTTGCC GATTCGCGGC
GACGGCATGG TTCTGCGCAT GTCGCGCGCC AACTGGGCCG AGCGTTTGCG CGACTGGAAC
GCGACCGAAG CCCAGCTGGC CGCGCTGGAA GCCGAGGGGC AGCTGGGTGC CGATGACTGG
CGACGCCTGG CCAATGCCCG CGTGCAGCTG CTGGACGAAG AGGGCCTGCA GCGCCTGCTG
ACGCAGTCGC CATCGCCTGC GGCGGAACGC GAGGTGCGCC TGGCCATGCT CGACCATGCC
GTGTCACTGG GGCGCCTGGA CATGGCGCGC CGCTGGCTGG CCAGCCTGCC GGCGGCAGAC
CGCGACAGCG ATGCGCAACG TGCGCGGATA TGGGAGCTGG CCCGCCAGGG CGGCGATGCA
CCTCTGGTAC GCGAGCTGGG CGACCAGTTG CGCCGTCCCT GTCTGGAAAC CGCCGAATGG
CTGTCGCGTC ACGATCAGGC GGCCGCCCGT CAGCAGCTGC AGACGTGCCG TGGCGAGGAC
GATCCGCAGA CCTGGCTGGT GCTGGCGCAA CGTCTGCATG CGACCGATCT GCTCGAGCGC
CAACGTCTGC CGGAGCCCTG GGATTCGGCG CGTCGCGAAC GTCTGCTGGA GCTCTGGCGC
GAGCAGGGGC GCAGCGACCT GGCGCTGGCC TGGCTGGCGC GACAGCCGCA GACGCCGGCG
CTGCAGCGCA GGCGTGCCGA GTTGCTGCAG GCTTCCGGCC AGACCGAGCA GGCCGAGCGC
CTGTGGCTCG ACTACTACCG TAGCAGTGGT GACCTGCAGG CCCTGGATCA GGCCAGTTAC
CTGGCCGTGC AAGGTGGCCG CCGCGATCAG GCGCGGCAAT GGCTGGAGCA GGCCTTCGAC
CGACAGGGCG GGCGCCTGCC GGTGCCACTG TTGCAGCGCC TGGCCGGGCT CTACGCCGAG
ACCGGTGCGC CGTTCGACGC GGTTCGTGCC CGTGCGCTGC TGCCTCATCT GGATGGCGAC
AGCCGCGCCT CGCTGCTGGG GCGCATGGCC GAAAGCGGCG ACTGCAACTG GTTGCGCGGC
GAGATCGGTG AAACCCCACG CGCTCCGGTG GAGCTGCGCA TACTGGGGCG TTGCGCCATG
CCGGCGCGCC CAGGCGAGGC CGTCATCTAC TATCAGCAGG CGCTGGCTCA GGGCGATCAA
GCCAGCCGCC TGCCGCTGGC CTATGCCCTC GAGGCTGCCG GCGATGCGCC TGCCGCCTGG
CGTATCTGGC GGGAACAGGC GCCGGAGCGG CTGGACAATA TCGCCCGTCT CACCGCGGCG
CGCAGCGCCC TGACCGCCGG CGAGCCGCAG GCAGCCGAGC GCTACTGGCA GTCGGCGCAA
TCCGCCAGCG CCGACGATTG GGCTCTGGGT GCGGCCATCG CCCAGGCGCG CAGCGACCTG
CCGTTGGCCC TGGCGCGCCA GCGTCAGGCG CTGCAGAGCC AGCCCGCGGC CAGCCACTAC
TACGGCGCTG CGGCCACCGC CCAGCAGGCC GGTGACCTGC CGCAGAGCAG TGCATGGCTG
GCCGAGGCCG TGCGCCTCGA GCCGGACCAT CCGCGCTACA ACGCCGACTA CGGCATGCGC
CTGGCGGCGT CACCCAGTGC CGAGCAGCGC CGCCGCGCCA TTGCGCTGCT GGAGCGTGCC
ACGCGCGACT TTCCCGAGGA CTACCGCATC GGCGAGACAC TGGCCTGGCG TTACGACGAG
GCCGAGGACA GTGCCGCCGC GCGCCGCGAA CTGCGCCGGG TGATCGATCT GGAGCAGAAC
CCGGTGGCCG GCGCTGACGA GTACGGCAGC CTGGAGGCGC GGCGCTACCG CCAGCGCAGG
GCCCATGAAA CGCTGTCGCG GCGCGACAGT TTCACCCTGG CCAGTACCTG GTCGCCGGCT
GGCGTGGCGA CCAACGACAT CCTGCGTGAT GACGGCAGCC GCTCCGGTGA GGAGCGCCGC
GCGGCCTCGA GCAATGTGCA GATGGCCGTC TGGGACCATG CCCTGGGTGA GGAGCCGAGC
CGTGCCGGGC GTTCGTTGTC GGTCTACGGT CGGGCGCTGC TGGGCGGCGA TGGTCGCCAC
CGCTACGGCC GCTCGCTGGG CCTGGGGCTG GGCCTGCGTT ATCGACCCAT CGGCACGCAG
AATCTCAACC TGTATGGTGA GCTGTATGCG CAAAGCGAGC TGGACGACGC CGACTTCGAC
GGTTTCAGCC TCGGCCAGTG GCTCAACCCC GGCGAGGTTT CCGACGCCCT GAACGACCAC
GTGCGCAAGG GGCGCGTCAG CACCGATCTA CTGCTGCGCG CCACCGCCTC CTTCCTTGAT
CAGGGGGACT GGCGCAACGA CTGGCGGGTC GACGAGGACC GCTGGAACGA GCGCTTTCTC
TACCTCGATG CCGCCTGGTG GACCCGTGCC GGGGACCACG CCTGGCTGTC GCGCTTTCAG
CAGGGGCACG CCTGGAAGTT GCACACCGAG AGCGCCCAGA CCCTGATGCC ATACGGGTTC
ATCGAGTTCA GCGCCCAGGA CCCGAACAAC GACTGGCGCC AGGATCTGCG CACCGGGGTC
GGGCTGCGCT GGCAACTCTG GTACGGCGAC AGCCGTTACA ACGCCTACCC GGCTCGGGTC
ACCGTGCGTG GTGAATATCA GTGGGGCCTG GCCGGCAACC TTTACGAGCG CGCTGACGGC
TGGTTGCTGG GCGTGGAGGT GAATTTCTGA
|
|---|
| Protein sequence | MKRLFGFPLL ACLVAFPVAA AEPLSGFQQF RSYPFLDRAY REAGRNNWGE VERLMRHLLE
RVPRSEEARR LLMEALIKQR RYAEAEALSA ELGEGHEALL ELRLAWIEQD PPTATQVEQW
LLHSEGDQRV RLWQAYSLSL AKFGGAKRAL DWLSQLPIRG DGMVLRMSRA NWAERLRDWN
ATEAQLAALE AEGQLGADDW RRLANARVQL LDEEGLQRLL TQSPSPAAER EVRLAMLDHA
VSLGRLDMAR RWLASLPAAD RDSDAQRARI WELARQGGDA PLVRELGDQL RRPCLETAEW
LSRHDQAAAR QQLQTCRGED DPQTWLVLAQ RLHATDLLER QRLPEPWDSA RRERLLELWR
EQGRSDLALA WLARQPQTPA LQRRRAELLQ ASGQTEQAER LWLDYYRSSG DLQALDQASY
LAVQGGRRDQ ARQWLEQAFD RQGGRLPVPL LQRLAGLYAE TGAPFDAVRA RALLPHLDGD
SRASLLGRMA ESGDCNWLRG EIGETPRAPV ELRILGRCAM PARPGEAVIY YQQALAQGDQ
ASRLPLAYAL EAAGDAPAAW RIWREQAPER LDNIARLTAA RSALTAGEPQ AAERYWQSAQ
SASADDWALG AAIAQARSDL PLALARQRQA LQSQPAASHY YGAAATAQQA GDLPQSSAWL
AEAVRLEPDH PRYNADYGMR LAASPSAEQR RRAIALLERA TRDFPEDYRI GETLAWRYDE
AEDSAAARRE LRRVIDLEQN PVAGADEYGS LEARRYRQRR AHETLSRRDS FTLASTWSPA
GVATNDILRD DGSRSGEERR AASSNVQMAV WDHALGEEPS RAGRSLSVYG RALLGGDGRH
RYGRSLGLGL GLRYRPIGTQ NLNLYGELYA QSELDDADFD GFSLGQWLNP GEVSDALNDH
VRKGRVSTDL LLRATASFLD QGDWRNDWRV DEDRWNERFL YLDAAWWTRA GDHAWLSRFQ
QGHAWKLHTE SAQTLMPYGF IEFSAQDPNN DWRQDLRTGV GLRWQLWYGD SRYNAYPARV
TVRGEYQWGL AGNLYERADG WLLGVEVNF
|
|---|
| |