Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1638 |
Symbol | |
ID | 5109612 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1800635 |
End bp | 1801255 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640502866 |
Product | TetR family transcriptional regulator |
Protein accession | YP_001187134 |
Protein GI | 146306669 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.181149 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGAAAG AACCCCGTAA GGTCCGCGAA TTCCGTCGCC GCGAGCAAGA AATTCTCGAC ACCGCGCTGA AACTCTTCCT CGAACAGGGT GAAGACAGCG TTACCGTCGA GATGATCGCT GATGCGGTCG GTATCGGCAA AGGCACCATC TACAAGCACT TCAAGTCCAA GGCGGAGATC TACCTGCGCC TGATGCTCGA CTACGAGCGC GATCTCAACG AGCTGCTGCA TTCGGCCGAC GTGGATCGTG ACAAGGAAGC GCTGTCGCGC GCCTATTTCG AATTCCGCAT GCGCGACCCG CAGCGCTATC GCCTGTTCGA CCGCCTGGAA GAGAAGGTGG TCAAGGGCAA TCAGGTGCCG GAGATGGTCG AGCAGCTGCA CAAGATCCGC GCCTCCAACT TCGAGCGCCT GACCCAGCTG ATCAAGGGCC GCATCGCCGA AGGCAAGCTG GAAGACGTGC CGCCGTACTT CCACTACTGC GCCGCTTGGG CGCTGGTACA CGGCGCCGTG GCGCTGTACC ACTCGCCGTT CTGGAGCAAC GTGCTTGAGG ATCAGGAAGG CTTCTTCCAG TTCCTCATGG ACATCGGCGT GCGCATGGGC AACAAGCGCA AGCGCGACTG A
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Protein sequence | MQKEPRKVRE FRRREQEILD TALKLFLEQG EDSVTVEMIA DAVGIGKGTI YKHFKSKAEI YLRLMLDYER DLNELLHSAD VDRDKEALSR AYFEFRMRDP QRYRLFDRLE EKVVKGNQVP EMVEQLHKIR ASNFERLTQL IKGRIAEGKL EDVPPYFHYC AAWALVHGAV ALYHSPFWSN VLEDQEGFFQ FLMDIGVRMG NKRKRD
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