| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1562 |
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| Symbol | |
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| ID | 5109220 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1721397 |
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| End bp | 1722299 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640502790 |
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| Product | lipid kinase |
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| Protein accession | YP_001187058 |
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| Protein GI | 146306593 |
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| COG category | [I] Lipid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1597] Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase |
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| TIGRFAM ID | [TIGR00147] lipid kinase, YegS/Rv2252/BmrU family |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.264045 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCGAGC GCAAGGCCTG GCTGATCCTG CATGGCAAGC AGGCACTGAA CGAAGAGGTG
CGGGCGGCAG TGCACAACCT GCGCGAGCAG GGCTGGGAGC TGGCGGTACG CCTGACCTGG
GAGGCCGGCG ACGCCGAGCG TCTGGTGCGA GAGGGGCTGG CCGGCGGCTA CCCGACTCTG
ATCGCAGGCG GCGGCGACGG TACCTTGCGC GATGTCGCCG AGGCCATGCT GGAGGCCGGC
GCCGAGGCCA GCCTGGCCAT GCTGCCGCTG GGCACGGCCA ACGACTTCGC CCGCGCTGCC
GGGGTGCCGC TGGTGCCCAT GGAAGCCCTG CAGCTGCTTG AGGTCGAGCC GCGACCGGTG
GATCTGGGCC TGGCGGACGG GCGGGTGTTC CTCAACATGG CCACCGGCGG CTTCGGCTCC
ACCGTGACCG CGCATACCTC CGAGGAGATG AAGAAGGTCT TCGGCGGGGC TGCCTATCTG
CTCACCGGCC TCAGCCGATT TGCCGAACTG CGCTCGGCAT TCGGCCGTTT CCATGGGCCC
GGTTTCGAGT GGGAGGGGGA TTTTCTCGCC ATGGGCATCG GCAACGGACG TCAGGCCGGG
GGCGGCCATG TGCTGTGCCC GGAAGCGCTG GCCGACGACG GCATGCTCGA CCTGTGCATC
GTGCCGGCGC CGCAGGACAT TCCGGCGACC CTCGGCACCC TGCTGTCGGG TGGCATGCTC
GGCCTGGAGA CGGTGTCGAT CCGTGCACGG CTGCCTCAGG TCGAGCTGGA GGCGCCGGAA
GGCCTGGCCC TGAACCTCGA TGGCGAGCCG ACGCAAAGCA ATCGGCTGCG CTTCGAGACC
TGCCCGGCGG CGCTGCGCAT GCACCTGCCT CCAGGGTGCG CGCTGCTCGG CGGTGCAGGC
TAG
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| Protein sequence | MRERKAWLIL HGKQALNEEV RAAVHNLREQ GWELAVRLTW EAGDAERLVR EGLAGGYPTL
IAGGGDGTLR DVAEAMLEAG AEASLAMLPL GTANDFARAA GVPLVPMEAL QLLEVEPRPV
DLGLADGRVF LNMATGGFGS TVTAHTSEEM KKVFGGAAYL LTGLSRFAEL RSAFGRFHGP
GFEWEGDFLA MGIGNGRQAG GGHVLCPEAL ADDGMLDLCI VPAPQDIPAT LGTLLSGGML
GLETVSIRAR LPQVELEAPE GLALNLDGEP TQSNRLRFET CPAALRMHLP PGCALLGGAG
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