Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1333 |
Symbol | |
ID | 5109386 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1493235 |
End bp | 1493951 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640502561 |
Product | GntR family transcriptional regulator |
Protein accession | YP_001186830 |
Protein GI | 146306365 |
COG category | [K] Transcription |
COG ID | [COG2188] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.415136 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGAAG AAGCGCCGCG GGCCGTCACC ATCATCTGCC GCGCCCTGCA GGAGCAGATA GACCGGGGCC TGTTGCCCTC CGGCAGCAAG CTGCCGGCCG AGCGCAGGCT CAGCGAACTG TTCGATACCA CGCGCATAAC CCTGCGCGAG GCGCTCGGGC AGTTGGAGGC GCAGGGGCTG GTCTATCGCG AGGAGCGCCG TGGCTGGTTC GTTTCACCGA CGCGGGTGGC CTACAACCCC CTGGTTCGCA CCCACTTCCA CGCCATGGTG GCCGAGCAGG GGCGGGTACC GGCTACCGAA GTGCTGAGCG CCAGGCTGAT GCCGGCCAGT GCGGAAATCT GTCAGGTGCT GGAGTTGCCG GCGCTGTCGA GCGTCTATCA GGTATGCCGT GCGCGGCGCA TCGACGGGCG CCTGGTGCTG TACGTCGAGC ACTATCTCAA CCCGGCCTAT TTCCCCGGCA TCCTCGACTT CGACCTGACC CGCTCGCTGA CTGACCTCTA CGCCAGCGAG TACGGCATTC ACTACGGTCG CGTGCGCTTC GACATGGTGC CTACCGCGCT GCATGCCGAA GCTGCGGCCA GCCTCAAGGT GGCGCCCGGT AGCCCGGCGC TGCGCATCAC CCGGGTCAAC CGTGACCAGC ACGGGCGCAT CATCGACTGC GACCTGGAGT TCTGGCGCCA CGACGCCATT CACGTCAGCG TCGAAGTCCC CGAGTAG
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Protein sequence | MREEAPRAVT IICRALQEQI DRGLLPSGSK LPAERRLSEL FDTTRITLRE ALGQLEAQGL VYREERRGWF VSPTRVAYNP LVRTHFHAMV AEQGRVPATE VLSARLMPAS AEICQVLELP ALSSVYQVCR ARRIDGRLVL YVEHYLNPAY FPGILDFDLT RSLTDLYASE YGIHYGRVRF DMVPTALHAE AAASLKVAPG SPALRITRVN RDQHGRIIDC DLEFWRHDAI HVSVEVPE
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