| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1295 |
|---|
| Symbol | |
|---|
| ID | 5109111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 1455268 |
|---|
| End bp | 1456065 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640502521 |
|---|
| Product | 3-oxoadipate enol-lactonase |
|---|
| Protein accession | YP_001186792 |
|---|
| Protein GI | 146306327 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | [TIGR01250] proline-specific peptidases, Bacillus coagulans-type subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.523958 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTACT TCGACAACGA CGGTTGCCAG CTGCACTACG AGGACTATGG CCACGGCGCC
CCGCTGCTGC TGGTGCATGG CCTGGGCTCG AGCACCCGCG ACTGGGAATA CCAGGTGCCC
GTGCTCAGCC AGCATTACCG GGTTGTGGCG CTCGACGTTC GCGGCCATGG CCGCTCGGAC
AAACCGCACG AGGCCTATCG CATCGCCGAC TTCGCCGACG ACGTGGCCGC GCTGATCGAG
CACCTGCAGC TGTCGCCGGT GCACCTGGTG GGGATATCCA TGGGCGGCAT GATCGGCTTC
CAGCTGGCGG TCGACCACCC CGAGCTGCTG CGCACTCTGA CCATCGTCAA CAGCGGCCCG
GAGGTCAAGG CGAAAAGCCC GCGCGACTGG CTGGAAATCG GCAAGCGCTG GACCCTGGCG
CGCCTGCTCA GCCTGGAAAC CATCGCCAAG GCGCTGGCCA AGCTGCTGTT CCCCAGGCCC
GAGCAGGCCG AGCTGCGGCG CAAGGTCGAG GAGCGCTGGC CGCAGAACGA CAAGCGCGCC
TACCTGGCCA GCCTCGACGC CATCATCGGC TGGGGCGTGC GGGAACGGCT GAAGCGCATC
ACCTGTCCTA CCCTGGTGAT CACGGCCGAC CAGGATTACA CCCCGGTCGA GCGCAAGCGC
GAGTACGTCG CAGAAATGCC CGATGCACGC CTGGTGGTGA TCGAAAATTC GCGCCACGCC
ACACCACTGG ATCAACCCGA ACGTTTCAAT ACCGTCCTGC TCGCCTTTCT TGGCGAGACT
GCCAACAAGG AAAACTGA
|
|---|
| Protein sequence | MPYFDNDGCQ LHYEDYGHGA PLLLVHGLGS STRDWEYQVP VLSQHYRVVA LDVRGHGRSD
KPHEAYRIAD FADDVAALIE HLQLSPVHLV GISMGGMIGF QLAVDHPELL RTLTIVNSGP
EVKAKSPRDW LEIGKRWTLA RLLSLETIAK ALAKLLFPRP EQAELRRKVE ERWPQNDKRA
YLASLDAIIG WGVRERLKRI TCPTLVITAD QDYTPVERKR EYVAEMPDAR LVVIENSRHA
TPLDQPERFN TVLLAFLGET ANKEN
|
|---|
| |