| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1253 |
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| Symbol | |
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| ID | 5109069 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1413082 |
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| End bp | 1416180 |
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| Gene Length | 3099 bp |
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| Protein Length | 1032 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640502478 |
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| Product | membrane carboxypeptidase (penicillin-binding protein)-like protein |
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| Protein accession | YP_001186750 |
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| Protein GI | 146306285 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.722125 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.576763 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCGCGT TATGGCAATC GGATCCTCAG CACCGCGAAC TGGCGTCGAA CGTCTTGCCG
ACGGTCGACG ACAAGCCGGC TCCGCGGCCA CGCCGCTGGC GTCTGGCGTT TTACTCACTG
CTGGTGTTGT CGTTGGTGGC CGCCGCCGCG CTGTTGGTCT TCGAGTTGCG CAGCGCGCAC
TTCCAGGCCC GTGAGCTGAG CCGCTACGCC GCCACCCTCA CCTACCGTGT CGAGCAAGGT
CCCAGCCCGG ACATCCTCTA CCCCGCCGAC GGCCCCTTCG ACAAACGTCA GGGCTACGCC
TACCTGCCAC TGATGCTGGA GCGCCTGCAG CAACGTGACT TCACCATCAG CGAGCAGGCG
CGCTTCTCGC CGGCACTGAT GGCCTACAGC CGTCGTGGCC TGTTCCCGCC CTTCGTCGAG
AAGAGCCAAA CCGGCCTCAG CATCAGCGAC TGCCGCGGCA CGCCCTTCTA TGAGTTCCGC
TATCCGCAAC AGGGCTATGC CGATTTCGCC AGCATTCCGC CGCTGGTGGT GAGCAGCCTG
CTGTTCATCG AGAACCGCCA TCTGCTGGAT ACCGAGCAGC CGCTGGCCAA CCCGGCCGTG
GACTGGCCGC GGTTCGCCAT GGCCGCCCTG TCGCAGATCG GCAAGGTGCT CGACATGCAG
GACCAGTCCG CCGGCGGCAG CACCCTGGCC ACCCAGCTGG AAAAGTACCG CCATTCGCCG
GACGGCCTGA CGCTGTCGGC GGGAGAAAAA CTGCGGCAGA TGATTTCCGC CAGCGTACGC
GCTTACCAGC AGGGGCCGCA GACCCTGGAA GCACGCCAGA CCATCGTGCG CGACTACCTC
AACAGCGTAC CGCTGTCCGC TGCACCGGGG CACGGCGAGG TCCACGGCCT GGCCGACGGT
TTGCGCATCT GGTACGGCGC AGACTTCGAG CGCAGCAACG CCCTGCTCGC CCCGGCGCGC
ACGCCCGAGG CCAGCCTGGC CGAACGCGGT CTGGCCCTGC GCCAGGTCCT GTCGCTGATG
ATCGCCCAGC GCCGCCCCTC CTACTATCTG GCTCAGGGTC GCAAGGAAAT GGAGGCGCTG
ACGGAGAGTC ATATCCGCCT GCTGGCTGCC GGGGGGTTGA TCGACGCCGA ACTGCGTGAC
GCGGCGCTGA CGCAGAAGCT GCAGTACCGC GACTGGCAGC AGGAATCCAA CCTGCGCCCG
GTGGAAAGCG ACAAGGGCAT CAGCGTCGCC CGCTCACGTC TGTCCAATCT GCTGGGCATG
CCGCTGTACG ATCTGGACCG TCTCGATCTG GCCGCACGCA GCACCCTGCA GCGCGACCTG
CAGCAGGAGG CCAGCCTCTA CCTGCAACGC CTGGCCGACC CGGAATTCGC CGGCAAGATC
GGCCTGTTCG GCGAGCGCCT GCTGTCAGCG GAAAAGACCG CCGAGGTACG CTACAGCTTT
ACCCTGTTCG AACGCACCGC CACCGGCAGT CGGGTGCGCG TGCAGACCGA CAGCACCGAC
CAGCCGTTCG ACATTAATGA AGGCAGCAAG CTGGAGCTGG GTTCCACCGC CAAGCTGCGG
GTGCTGGCCA CCTATCTCGA AGTCATTGCC GAGCTGCATC AGCGCCACGC CGGCAAGAGC
CCGGCCGAGC TGCGCAGCGT CGAGATCGCC GAGCAGGACT ACCTGAGCCG CTGGGCGGTC
AACCACCTGC TGGCCAATCC CGGCGCCGAC CTGGCCAGCA TGCTGGAAGC CGCGCTGGAA
CGGCGCTACT CGGCCAGCCC GCACGAGCGT TTCTTCACCG GCGGCGGGCT GCATACCTTC
GGCAACTTCC GCCGCGAGGA CAACGGTCGC AACCCGACCC TGCGCGAATC GCTGCGCGAG
TCGATCAACC TGCCGTTCGT CCGCCTGATG CGCGACCTGG TGCGCTACAG CACCTATCAG
AACAGCGCCG AACTGCTCAA GGACGACAAG GACCCACGCC GCCAGGAATA CCTGCAACGC
TTCGCCGATC AGGAGGGGCG GACCTTCCTG CTGCGTTTCT GGCGCAAGTA CCAGGGCCAG
CCGGAACAGC AGCGACTGGA AACCTTCCTC AGCGGCCTGC GCCAGACCTC GGTGCGCCTG
AGCGCCGTGC ACCGCTACCT GCAGCCGCAT GCCGACGAGG CCACCTTCGC CGCGTTCCTG
CGCGCCCAGC TGCCGCAGGA AAAACTCAGC GATCAGCGTA TCGCGCGTCT GTATCAGGAC
TACGGCCCCG GCGCCTACAG CCTGCCGGAC CAGGGCTATA TCGCCCGGGT CCACCCTCTG
GAACTCTGGC TGCTGGGCTT TCTGATCGAG AATCCGCAGG CGAGCTTCGG CGACGCCGTG
GCCGCCAGCG TCGACGAGCG CCAGGAAGTC TATGGCTGGC TGTTCCGCAG CCGGCACAAG
AGCGCCCGCG ACAGTCGCAT CCGCATCATG CTGGAGGTGG AAGCCTTCTC CGACATTCAC
CGGCGCTGGA AGAACCTCGG CTATCCCTTC CAGCATCTGG TGCCCTCGCT GGCCACCGCC
CTGGGCAGTT CCGGCGACCG GCCGGCAGCG CTGGCCGAAC TGATGGGCAT CATCCAGAAC
GACGGCGTTC GCCAACCGGT GCTGCGCATC GACGAACTGC ACTTCGCCGC CGACACGCCC
TACGAGACGC GAGTCGAGCG CAACACCCAA GGCGCCAAGC GAGTGATGGC CTCGGAAGTG
GCTGCCGCGC TGCGCAATGC ACTGTCCCAG GTGGTCGAGG GCGGCACCGC GCGGCGGCTG
CAGGGCACCT TCCAGCTGCA GGACGGCAGC AACCTGACCC TGGGGGGCAA GACCGGGACC
GGCGACAACC GCATCGAAAG CGTCGGCGCG GGCGGGCGGG TGATCAGCTC GCGGGCGATG
AACCGCACGG CCACCTTCGT GTTCTTCCTC GGCCCGCGCC ACTACGGCAC CCTCACCGCC
TTCGTGCCGG GACGCGAGGC AGAGCGCTTC ACCTTCACCT CGGCCCTGCC GGTACAGGTG
CTCAAGGGCA TGGCGCCGAT ACTCGCCCCC TATCTGGAAC CGGGTAGCGT CACCCTTTGC
CAGGCGCCCC AGAGCGCGCC GCAGATCAGC TGGCGGTAA
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| Protein sequence | MGALWQSDPQ HRELASNVLP TVDDKPAPRP RRWRLAFYSL LVLSLVAAAA LLVFELRSAH
FQARELSRYA ATLTYRVEQG PSPDILYPAD GPFDKRQGYA YLPLMLERLQ QRDFTISEQA
RFSPALMAYS RRGLFPPFVE KSQTGLSISD CRGTPFYEFR YPQQGYADFA SIPPLVVSSL
LFIENRHLLD TEQPLANPAV DWPRFAMAAL SQIGKVLDMQ DQSAGGSTLA TQLEKYRHSP
DGLTLSAGEK LRQMISASVR AYQQGPQTLE ARQTIVRDYL NSVPLSAAPG HGEVHGLADG
LRIWYGADFE RSNALLAPAR TPEASLAERG LALRQVLSLM IAQRRPSYYL AQGRKEMEAL
TESHIRLLAA GGLIDAELRD AALTQKLQYR DWQQESNLRP VESDKGISVA RSRLSNLLGM
PLYDLDRLDL AARSTLQRDL QQEASLYLQR LADPEFAGKI GLFGERLLSA EKTAEVRYSF
TLFERTATGS RVRVQTDSTD QPFDINEGSK LELGSTAKLR VLATYLEVIA ELHQRHAGKS
PAELRSVEIA EQDYLSRWAV NHLLANPGAD LASMLEAALE RRYSASPHER FFTGGGLHTF
GNFRREDNGR NPTLRESLRE SINLPFVRLM RDLVRYSTYQ NSAELLKDDK DPRRQEYLQR
FADQEGRTFL LRFWRKYQGQ PEQQRLETFL SGLRQTSVRL SAVHRYLQPH ADEATFAAFL
RAQLPQEKLS DQRIARLYQD YGPGAYSLPD QGYIARVHPL ELWLLGFLIE NPQASFGDAV
AASVDERQEV YGWLFRSRHK SARDSRIRIM LEVEAFSDIH RRWKNLGYPF QHLVPSLATA
LGSSGDRPAA LAELMGIIQN DGVRQPVLRI DELHFAADTP YETRVERNTQ GAKRVMASEV
AAALRNALSQ VVEGGTARRL QGTFQLQDGS NLTLGGKTGT GDNRIESVGA GGRVISSRAM
NRTATFVFFL GPRHYGTLTA FVPGREAERF TFTSALPVQV LKGMAPILAP YLEPGSVTLC
QAPQSAPQIS WR
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