Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0958 |
Symbol | |
ID | 5108816 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 1081518 |
End bp | 1085201 |
Gene Length | 3684 bp |
Protein Length | 1227 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640502175 |
Product | Tfp pilus assembly protein tip-associated adhesin PilY1-like protein |
Protein accession | YP_001186458 |
Protein GI | 146305993 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.327934 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGCCA TTCGTGACAT TCGCGCCAGG ACACTGGCCA GCACCCTGTC CGGCATCGTC CTGCTCAGTG CGGCAAACAG CTATGCTGAT GTATCCCAAA CCCCGCTGAG CCTAACCGTT GGCGTGCCGC CAAACATGCT GCTGACTCTG GATGATTCAG GCAGTATGCG CTGGGCTTTT GCCCCCGACA TCGTCAACGG CACCCATGCG ACACGCCGAG CCAAATCGAG CGATTTCAAC CCGCTGTATT TCAACCCTAA TATCACCTAT CGCGCCCCTA CAGTGTTCAC CACTGCAGGG CTTGAGCAGC AGCTATCTAC CAGTTATACG AATGCTCTGC TGAATGGCTT TAAAAGTACA TACGGCGGCA TTGATCTGAG AAGCAACTAT AGGTTTACCT GGAGTTACGA CCTGCGCAGC ACACAGGCAA CCGCCTATGG CTACAGCAAT ACGGACAACC GTTTGGGCGA AAACCCCAGC GCAGATTTCA GCGCAAGCGT TTCTCGCAGC ACTAACGGCA CTAGCACGGT AACGAATGGC AACATCAGCT TCGCCATCAC CCGTAGCGGC TCCACCAGTT GCTCTGCCAC TGCCACTATT TCAGGGGTTA CAGTCACTGC AACCTGTACC GCTCCATCAA GCAACAACTA TACGGCTACC CTGGCTCAAC GCGGCGTACC CGCCTATTAC TATACGTACG ACGCCTCACT AGCTAGCAAC TGCACCACCG CCAATGACAG CTGCTATCGC CTGAACTTTG TCAGCGCCGC TCAGCAACAG AACTTCGCCA ATTGGTACTC TTTCTACCGT AACCGCGCGT TAGCAACGAC TTCCGCTGCG GCGCTGGCCT TCTATGACTT GTCTTCCTCG GTACGTCTAA GTTGGCAGGG GCTGGGTAAC TGCACCACCT TCAGCAGTAC AGATGCCAAT AGCCAGTGCA AGATCAACGC ATTCAAGGAA TACTCGCCGA CTCACAAAGG CCAGCTCTAT GCCTGGCTAC AGGATATCAA CTTCAACCAA GGCACTCCGT TACCAGCGGC GCTAAAGCGC GCTGGTGAGT TCTTTACCAC CGCCACTCCC TGGCAGAAAA ACCCCAACGG CAGTGGTAAC ACTACGCAGA ACACCTATGC CTGCCGCGCC AGCTACCATA TTCTGATGAC CGACGGCATG TGGACCTCAA CCACCAGCGC GCCCAGTAAC TTTCGTCACG ATGCGGCCAC CTTCACGCTG CCGGACGGAC GCAATTACAG TGAACGTCGC CCTTATTACG ATACGACTGC CGATACCCTG GCTGACTTGG CCATGCACTA CTGGGCCACG GATCTCAATC CCAACCTAGC CAATCGCGTC CCCGCCTATA CCCCCTTCAA AAGCGGTGAT ACCACCACCG ACTACTGGGA CCCGCGCAAC GATCCGGCCA CTTGGCAGCA TATGACCAAC TTCGTCATGG GCCTGGGCCT GACGCAGTCG CTCAACAACG CCAACGTGCC ATGGGCTGGC AGCACCTTTT CCGGTGCAGG CTATAGCAAT CTGGTAGCCG GCACGGCCAA CTGGCCGCCA GTGGCCGCCA GTGGCGCTAA CAATGCCAAC AACGTCTACG ATCTTTGGCA TGCGGCGATC AACTCTCGCG GCGAGTTCTT CAGTGTGGAT AGCCCCGAGG CCATGGTGCA GGCCTTCGAT GACATCCTCA AGCGTATCGC CGACCGCAAG TCGACTGCGG CCCGCCCCGC AATCAACTCT GGCCAGGTCA GTGCAGACGA GAACGATGAG GGCAAGGTCA TCACCGTTTC GTACCAGACC TCATACGCCA GTGACGACAA CTGGTCGGGT GATGTGAAAC GTTTCGAGAA ATCTTGGAAC GCACAAAGCA ATGCTTTCGA AACATCTCAG GTCTGGAGCG CAGAGTCCCA GGTACCGGGG TGGGCCAACC GCAATATCAA GATCGCGGGC GACAGCAACA ACGGTTTGGT AAATTTCAGC TGGGCTAACG CGGGCTCCGC CAATACGGTA GGCACCCTTG CCTACTGGCT TAATCGCGAT CCGGAGAACA GTAACGTCGT CGATAACCGG GCACAGCAAC GACTGGAATA TTTACGTGGC AACCGCAGCG GCGAGGGCAG TACCTTCCGC CAGCGTAGCA GCGTGCTGGG CGACTTCTAT TCCTCTACAC CTGCTGTGGT GAGTGGAGCG CGGTATCTGG TCAACGTGAC CAATGCCCTA GAAAACACCA ATACGTACAG CGCCTTCGCC AGCACTGTAG CCAGCCGTAC CCCCCGAGTT TATGTCGGCG GCAACGATGG CATGCTACAC GCATTCAATG CCAAGACCGG GGTGGAGGAG TTCGCCTTTA TTCCCAGCGC AGTGTTCAAC AAACTGAACA AACTCACCGG TAGCAACTAC AGCCATGAGT TCTATGTAGA AGGCACCCCT GTAGTGGGCG ATATCTTTAC CGGCACCGAA TGGCGCACCA TTTTGATCGG CACGCTCAAG GCGGGTGGAA AGTCTATTTT TGCCCTCGAC ATCACGACCC CTGGCGAAGA GAAACTGCTG TGGGAGTTTG ATGACAGCCG GCTCAGCGCA TCGACGGTGA AGATGGGCTA CACCTTCGCG CAACCGACCA TCGCGCGCCT CCATTCCGGG AAGTGGGCGG TGGTTATCGG CAACGGATAT GAAAGCGAGG GTAATACCAG CGGTAAAGCG GCGCTCTTTA TTATCGATGC CTTGGAGGGC AACCTGCTCA AGAGCCTGGA GGTCCAAGGC ACCGAAGGCG TTGCCAACGG TCTATCTACC GCCAAGCTTG GTGACTTCAA TGCCGACGGT GTGGCCGATT ATGCCTATGC AGGTGACCTG CAAGGAAATG TCTGGCGTTT CGATCTTTTG CGTAACGGCC GCAGCGAAAG CGCGCCCTTT ACTCGTGAGG ATGACGGCCA AACGGCGATC TCCGACTTCA AAGTTGCCTA TGGTGGAGCT CCGCTGTTCC GCGCCACTTT CAACAATACT CCCCAACCCA TTACCTCAGC ACCAAGCATA GTCTTGCACC CGACCGGCAC GGGCTATCTG GTGGTCTTCG GCACTGGCAA GTTCTTCGAA ACCGGTGACA AGGAAGGCGA CAAGAGTATC GCGCAGTCAG TCTATGGCAT CTGGGACAAA CAGACCAAAG GCCAGCCATC CAGCAATCCA GGAATCACCC GCAGCAGCTT GCAACAGCAG AGCATAAGCG AACAGACTAC CGTAAGCGCC GAGGATGGCA CTACACGTCA AGGCCGCATT ATCAGTAACA ACTCCATCGA CTGGAGTACG CAGAACGGTT GGTATCTCAA TCTTGTGCAA AGTGATGGCG AGATGGTTGT AGAGAACATG TCGCAGCTGG GGCGCACTAT CTTCATGCAG TCTCTGGTAC CCAATGACGA TCCTTGTGGC GATGGTGCGG CAAACTGGAC CTATGCGCTC AACCCTTTCA CTGGTGGGCG TACCGTTCAG AACTCTTTCG ATTACACACC TACGGGTGAA GCGCAAAGCA CCAACATATC GGCCATTCGC CAGGATGGAG AAGGTGGCGG TACCATCTCG CAGAACTCCG ACAGCGGGTT CCAATACTGC ACTGGCCAGA CCTGCGTGAA TATCTACCCA GATCCATCCA GCATCGGTCG TCAGACCTGG CGGCGCGTGG AGACTGAGGA CTAA
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Protein sequence | MNAIRDIRAR TLASTLSGIV LLSAANSYAD VSQTPLSLTV GVPPNMLLTL DDSGSMRWAF APDIVNGTHA TRRAKSSDFN PLYFNPNITY RAPTVFTTAG LEQQLSTSYT NALLNGFKST YGGIDLRSNY RFTWSYDLRS TQATAYGYSN TDNRLGENPS ADFSASVSRS TNGTSTVTNG NISFAITRSG STSCSATATI SGVTVTATCT APSSNNYTAT LAQRGVPAYY YTYDASLASN CTTANDSCYR LNFVSAAQQQ NFANWYSFYR NRALATTSAA ALAFYDLSSS VRLSWQGLGN CTTFSSTDAN SQCKINAFKE YSPTHKGQLY AWLQDINFNQ GTPLPAALKR AGEFFTTATP WQKNPNGSGN TTQNTYACRA SYHILMTDGM WTSTTSAPSN FRHDAATFTL PDGRNYSERR PYYDTTADTL ADLAMHYWAT DLNPNLANRV PAYTPFKSGD TTTDYWDPRN DPATWQHMTN FVMGLGLTQS LNNANVPWAG STFSGAGYSN LVAGTANWPP VAASGANNAN NVYDLWHAAI NSRGEFFSVD SPEAMVQAFD DILKRIADRK STAARPAINS GQVSADENDE GKVITVSYQT SYASDDNWSG DVKRFEKSWN AQSNAFETSQ VWSAESQVPG WANRNIKIAG DSNNGLVNFS WANAGSANTV GTLAYWLNRD PENSNVVDNR AQQRLEYLRG NRSGEGSTFR QRSSVLGDFY SSTPAVVSGA RYLVNVTNAL ENTNTYSAFA STVASRTPRV YVGGNDGMLH AFNAKTGVEE FAFIPSAVFN KLNKLTGSNY SHEFYVEGTP VVGDIFTGTE WRTILIGTLK AGGKSIFALD ITTPGEEKLL WEFDDSRLSA STVKMGYTFA QPTIARLHSG KWAVVIGNGY ESEGNTSGKA ALFIIDALEG NLLKSLEVQG TEGVANGLST AKLGDFNADG VADYAYAGDL QGNVWRFDLL RNGRSESAPF TREDDGQTAI SDFKVAYGGA PLFRATFNNT PQPITSAPSI VLHPTGTGYL VVFGTGKFFE TGDKEGDKSI AQSVYGIWDK QTKGQPSSNP GITRSSLQQQ SISEQTTVSA EDGTTRQGRI ISNNSIDWST QNGWYLNLVQ SDGEMVVENM SQLGRTIFMQ SLVPNDDPCG DGAANWTYAL NPFTGGRTVQ NSFDYTPTGE AQSTNISAIR QDGEGGGTIS QNSDSGFQYC TGQTCVNIYP DPSSIGRQTW RRVETED
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