| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0957 |
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| Symbol | |
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| ID | 5108815 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1081090 |
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| End bp | 1081515 |
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| Gene Length | 426 bp |
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| Protein Length | 141 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640502174 |
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| Product | Tfp pilus assembly protein PilE-like protein |
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| Protein accession | YP_001186457 |
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| Protein GI | 146305992 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4968] Tfp pilus assembly protein PilE |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.296711 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTAAGC AGCTGAACCG ACAGCAGGGC TTTACCCTGA TAGAAGTGAT GATCGTAATA
GTGGTGATCG GCATATTGGC CTCTATTGCC TATCCGAGCT ACAGCGAGTA TGTAAAACGG
GGCAATCGCA GCGAGGGTCA GGCATTCCTC AACGATGTTG CGGCACGTCA GGAGCGCTAT
TTTTCGCAGA ATAATGCCTA CGTCACCAAT AACGCCGACA TTGGTAATCT TGCACTGAAG
AATGGAAATA AGTCAGAGAC AGGCAAATAC GAGCTGGTTC TTAGCAAAGT TGACAATGAC
GGGGGATATA CGTTAACTGC AGAAGAGCAG TTCAACGATA CCACGTGCGG AAATCTAACC
CTAAACGCCA GAGGAGTCAG AGGACGAACT GGTAGCGACA TGAGCGCTGC AGATTGTTGG
CGTTGA
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| Protein sequence | MSKQLNRQQG FTLIEVMIVI VVIGILASIA YPSYSEYVKR GNRSEGQAFL NDVAARQERY
FSQNNAYVTN NADIGNLALK NGNKSETGKY ELVLSKVDND GGYTLTAEEQ FNDTTCGNLT
LNARGVRGRT GSDMSAADCW R
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