| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0643 |
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| Symbol | |
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| ID | 5106941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 711813 |
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| End bp | 714299 |
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| Gene Length | 2487 bp |
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| Protein Length | 828 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640501856 |
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| Product | RNAse R |
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| Protein accession | YP_001186143 |
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| Protein GI | 146305678 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.00135735 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCGATT GGCAATCCCT CGATCCCGAG GCCGCCCGCG AGGCGGAAAA ATACGACAAC
CCCATCCCTA GCCGCGAACT GATTCTGGCC CACCTGGCCG AACGGGGTTC GCCCGCCAGC
CGCGAGCAGC TGGTCGAGGA ATTCGGCCTC GACACCGAGG ACCAGCTCGA GGCGCTGCGC
CGCCGTCTGC GCGCCATGGA GCGCGATGGC CAACTGATCT ATACCCGCCG CGGCACCTAC
GCGCCGGTGG ACAAGCTCGA CCTGATCTGC GGTCGCATCA GCGGTCACCG CGACGGCTTC
GGCTTCCTCG TGCCGGATGA CGGCAGCGAC GATCTGTTCC TCAGCCCGGC GCAGATGCGC
CTGGTATTCG ATGGCGACCG CGCCCTGGTG CGTGTGGCCG GTCTCGACCG TCGCGGCCGC
CGTGAAGGCG GCATCGTCGA AGTGATCAGC CGTGCCCACG AGAGCATCGT CGGCCGCTAC
TACGAGGAAA GCGGTATCGG CTTCGTGGTG GCCGACAACC CGAAGATCCA GCAGGAAGTG
CTGGTCACGC CGGGACGCAC CGCCGGCGCG CGCATCGGCC AGTTCGTCGA GATCAAGATC
ACCCACTGGC CGACCCAGCG CTTCCAGCCG CAGGGCGACA TCGTCGAGGT GATCGGCAAC
TACATGGCGC CGGGCATGGA GATCGACGTG GCGCTGCGCA GCTACGACAT TCCGCATGTC
TGGCCCGAGG CGGTGATCAA GGAGGCGCGC AAGCTCAAGC CCGAGGTGGA GGAGAAGGAC
AAGGAGAAGC GCATCGACCT GCGGCACCTG CCTTTCGTCA CCATCGATGG CGAGGACGCT
CGCGACTTCG ACGACGCCGT GTACTGCGAG AAGAACAGCA GTCGCTGGAA GCTGTTCTCC
GGTGGCTGGA AACTCTACGT GGCCATCGCC GACGTGTCGC ACTACGTCAA GGCCGGCTCC
GCCCTGGATG CCGAAGCCAC CGAACGCGGC AACTCGGTGT ACTTCCCCGA GCGCGTCGTG
CCGATGCTGC CGGAGGAGTT GTCCAACGGT CTGTGCTCGC TCAACCCGCA CGTCGATCGG
CTGGCCATGG TCTGTGAAAT GACCATGTCC AAGAGCGGCC AGATGGTCGA CTACAAGTTC
TACGAGGCGG TGATCCATTC CCACGCGCGC CTGACCTACA ACAAGGTCAG CCTGATGCTG
GAAGATCCCA AGAGCAGCGA GGGCAAGTCC CTGCGCAGCG AGTACAAGGA GGTTCTGCCG
CACCTCAACC AGCTCTATGC GCTTTACCAG GTGCTGGTGG CCGCTCGTCA CGAGCGTGGC
GCCATCGACT TCGAGACGCA GGAGACGCGC ATCATCTTCG GCACCGATCG CAAGATCGAC
GAGATCCGCC CGACCCAGCG CAACGATGCG CACAAGCTGA TCGAGGAATG CATGCTGGCG
GCCAACGTCG CCACCGCGCG CTTCATGCAG GATCACGACA TTCCGTCGCT GTATCGCGTG
CATGATGGTC CGCCGCCGGA GCGTCTGGAG AAGCTCAAGG CCTTCCTCGG TGAGCTGGGG
CTGTCGCTGC AGCGTGGCAA GTCCAAGGAC GGTCCGACGC CCAAGGATTA CCAGCGCCTG
CTGGAAAGCA TCCGCGAACG CCCGGATTTC CACCTGATCC AGACCGTGAT GCTGCGCTCG
CTGAGCCAGG CGGTATACAG CGCGCAGAAC GAGGGCCACT TCGGTCTCAA CTACGAGGCC
TATACCCACT TCACCTCGCC GATCCGTCGC TACCCCGACC TGCTGGTGCA CCGCGCCATT
CGCAGCGTGA TCCGCTCCAA GCGTGAAACC AAGCACGTGG AGCGCGCTGG CGCGGCGAGC
ATGCCCAAGG CGCGCATCTA TCCGTACGAC GAGGCGACCC TGGAAAAACT CGGCGAGCAA
TGCTCGATGA CCGAGCGCCG CGCCGACGAA GCGACGCGCG ACGTGGTCAA CTGGCTCAAG
TGCGAGTTCA TGCAGGATCG CGTCGGCGAG ACCTTCGCCG GTGTGATCAC CGCAGTGACC
GGCTTCGGCA TCTTCGTCGA GCTGCGCGAC ATCTACGTCG AGGGCCTGGT GCATGTCACC
GCGCTGCCGG CCGATTACTA CCACTTCGAT CCGGTCCATC ATCGCCTGTC CGGCGAGCGC
AGCGGCCGCA GCTTCCGCCT TGGCGACAGC GTCGAGGTCA AGGTGATGCG CGTCGATCTG
GACGAGCGCA AGATCGACTT CGAACTGAGC CAGGGCAAGA CCGACAAGGG CGATGATGCG
CGCCGTGGCG GCAAGCCGAG CGGCATGGGC AATACCGACG TGCAGAAAAG CCGTGAGGTG
AAGAAGGCCC TGCTCGACAG CGCCAAGAAG AGCGGCGGCA AGGCGCCGGC GAAGAAAACG
TCCAGCCATC GCAAGGGCGC GCCTGCGCCC AAGGCCAAGG CCGAGACAAG CGGTAGCAAG
CCGAGCAAGC GTAAGGCGAA ACGATGA
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| Protein sequence | MADWQSLDPE AAREAEKYDN PIPSRELILA HLAERGSPAS REQLVEEFGL DTEDQLEALR
RRLRAMERDG QLIYTRRGTY APVDKLDLIC GRISGHRDGF GFLVPDDGSD DLFLSPAQMR
LVFDGDRALV RVAGLDRRGR REGGIVEVIS RAHESIVGRY YEESGIGFVV ADNPKIQQEV
LVTPGRTAGA RIGQFVEIKI THWPTQRFQP QGDIVEVIGN YMAPGMEIDV ALRSYDIPHV
WPEAVIKEAR KLKPEVEEKD KEKRIDLRHL PFVTIDGEDA RDFDDAVYCE KNSSRWKLFS
GGWKLYVAIA DVSHYVKAGS ALDAEATERG NSVYFPERVV PMLPEELSNG LCSLNPHVDR
LAMVCEMTMS KSGQMVDYKF YEAVIHSHAR LTYNKVSLML EDPKSSEGKS LRSEYKEVLP
HLNQLYALYQ VLVAARHERG AIDFETQETR IIFGTDRKID EIRPTQRNDA HKLIEECMLA
ANVATARFMQ DHDIPSLYRV HDGPPPERLE KLKAFLGELG LSLQRGKSKD GPTPKDYQRL
LESIRERPDF HLIQTVMLRS LSQAVYSAQN EGHFGLNYEA YTHFTSPIRR YPDLLVHRAI
RSVIRSKRET KHVERAGAAS MPKARIYPYD EATLEKLGEQ CSMTERRADE ATRDVVNWLK
CEFMQDRVGE TFAGVITAVT GFGIFVELRD IYVEGLVHVT ALPADYYHFD PVHHRLSGER
SGRSFRLGDS VEVKVMRVDL DERKIDFELS QGKTDKGDDA RRGGKPSGMG NTDVQKSREV
KKALLDSAKK SGGKAPAKKT SSHRKGAPAP KAKAETSGSK PSKRKAKR
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