| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0562 |
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| Symbol | |
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| ID | 5108186 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 610486 |
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| End bp | 611622 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640501775 |
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| Product | 2-nitropropane dioxygenase, NPD |
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| Protein accession | YP_001186064 |
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| Protein GI | 146305599 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000000000315665 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCTGCCA AAAGCTGCCA TTTGCAGCTA CAGCTTTCCG GCCTTAGGCT TCCATGCTCT
CGCACCAGAA CAGAGAAGCG CAGCATGCAT CTAACCGCCC TGCTCGACAC TGACCTGCCC
CTGATCCAGG CGCCGATGGC CGGCTCGCAG GATCATCGCC TGGCCGCCGC CGTGTGCCAG
GCCGGTGGCC TCGGCTCGAT TCCCTGCGCC ATGCTCACGC CGGCCGCCCT GCGCCAGGAG
CTGCAGGCGA TGCGCGAGCT GACCGAGCGG CCGTTCAACC TCAACTTCTT CAGCCATGTG
CCACCCGAGC CGGACGCGGC CCGCGAGGCT GGCTGGCGTG AAGCGCTGGC GCCCTACTAT
GACGAACTGG GCGTAGACCC GGCGAGCATT GCCAGCGGGC CCGGACGTCT GCCGTTCAAC
GCCGAAGCGG CCGCGCTGGT GGAGGAATTT CGCCCGGCGG TGGTCAGCTT CCACTTCGGC
CTGCCGCAGC CGGAGCTGCT GGAGCGAGTC CGGCGCAGCG GGGCAAAGAT CCTCTCCAGC
GCCACCACCC TGAACGAGGC GCTGTGGCTG CAGGCGCAAG GCGTCGATGC GGTGATCGCT
CAGGGGCTGG AAGCCGGCGG CCATCGCGGA CACTTTCTCG ATCACGACCT GAGCCGCCAG
CTCGGTACCT TCGCCCTGCT ACCGCAACTG GTCGATGCGC TGTCGGTGCC GGTGATCGCC
GCCGGCGGCA TCGCCGACGC CCGCGGCGTA GCCGCGGCCA TGACCCTCGG CGCTGCCGGG
GTACAGGTCG GCAGCGCCTA CCTGCTGTGC CCCGAGGCCG CTACCGGCGC CATTCACCGC
GCTGCCCTGC AGAGCCCGGC GGCACACCAT ACGGCGCTGA CCAACCTGTT CAGCGGCCGC
CCCGCGCGCG GCATCGTCAA CCGTCTGATG CGTGAGCTGG GGCCGATCAG CACGCATGCG
CCAGAGTTCC CCCTGGCCAC CGCGGCCATC GCACCGCTGC GCGCGGCGGC CGAGGCCCAG
GGCAGCGGCG ACTTCTCGCC GCTGTGGGCC GGGCAGAACG TCGCCAGCTG CCGGCCAATG
CCGGCGGCTG AGCTGACCCG TGAGCTGGCG CAGGGCTTCG AAGCACATCT CGGCTGA
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| Protein sequence | MPAKSCHLQL QLSGLRLPCS RTRTEKRSMH LTALLDTDLP LIQAPMAGSQ DHRLAAAVCQ
AGGLGSIPCA MLTPAALRQE LQAMRELTER PFNLNFFSHV PPEPDAAREA GWREALAPYY
DELGVDPASI ASGPGRLPFN AEAAALVEEF RPAVVSFHFG LPQPELLERV RRSGAKILSS
ATTLNEALWL QAQGVDAVIA QGLEAGGHRG HFLDHDLSRQ LGTFALLPQL VDALSVPVIA
AGGIADARGV AAAMTLGAAG VQVGSAYLLC PEAATGAIHR AALQSPAAHH TALTNLFSGR
PARGIVNRLM RELGPISTHA PEFPLATAAI APLRAAAEAQ GSGDFSPLWA GQNVASCRPM
PAAELTRELA QGFEAHLG
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