| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0546 |
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| Symbol | |
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| ID | 5108170 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 583774 |
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| End bp | 585894 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640501759 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_001186048 |
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| Protein GI | 146305583 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGCT CTCTTTCGCG TCTTAGCGTC GCCGTATTGG CCACGCTGCT ATCGCCCGCA
ATATTGGCGG CCAATCTTCA GGATTTGAAT GTCGCCAGTT TGCCTGGGGA CCGGGTGGAG
CTGAAGCTTT CCTTTGACGA GCCGGTTACA GCTCCTCGCG GCTACACCAT CGAGCAGCCG
GCGCGTATCG CTCTGGACCT TCCGGGAGTT TCGAACAAGC TCGGCGCTAA GAATCGAGAG
CTTGGTGTTG GCAATGCACG TAGTGTCACT ATCGTCGAGG CTAAAGATCG CACTAGGCTG
ATCGTCAATC TCACCAGTCT GGCGCCATAC AGTACCCGAG TCGAGGGTAA TGACTTGTAT
GTCCTGGTGG GCGATTCCTC CGCTAGTGTA ACCCGGTCGT CGGCCTCGGC ACCTGCTGCC
GTAGCGGCAG TTCCGCCCAA GAAGACTTAC GGCCCGCAGC CGAAAGCTAT CAACAATATT
GACTTTCAGC GTGGTGAGCA GGGTGAGGGT AATATTGTTA TTACCCTTTC CGATGCATCC
GTGAGCCCTG ATATCCAGGA GCAAGGCGGG AAGATCCGCT TGGATTTCGC GAAAACCGAG
CTTCCTGAGT CCTTGCGCGT GCGTCTGGAT GTGAAGGATT TTGCAACCCC AGTGCAATTC
GTAAGCGCTA CCGGCAGCGC GGACAAAACT AGCATTCTGG TCGAGCCGGT CGGTCTTTAT
GATTATCTGG CTTACCAGAC CGAGAACAAG CTGACCCTGA GCGTCAAACC GCTTACTCAG
GACGATGTAG AGCGACGCAA GGCTGAACGT TTCGCTTATA CCGGGGAGAA GTTGTCGCTT
AACTTCCAAG ATATCGATGT GCGTTCGGTT CTGCAATTGA TCGCTGACTT TACCGACCTG
AACTTGGTAG CCAGTGATAC CGTTGCCGGT AATATCACCT TGCGTCTGCA GAATGTGCCA
TGGGATCAGG CCCTGGATCT GGTGCTTAAG ACCAAGGGGT TGGACAAGCG TCAGATTGGT
AATGTATTGC TGGTCGCTCC GGCGGATGAG ATTGCCGCTC GTGAGCGGCA GGAGCTGGAG
TCACAAAAGC AAATTGCTGA GCTGGCTCCG CTTCGCCGAG AACTGATTCA GGTGAACTAT
GCCAAGGCTA CCGACATGGC CAAGCTCTTT CAGTCGGTTA CCAGTGCCGA CGGTACGCCT
GACAGTCGAG GTTCTATCAC GGTCGATGAT CGCACCAACA GTATCATCGC TTATCAGACC
CAAGAGCGTC TGGATGAGTT GCGTCGTATC GTTGCGCAGC TTGATATCCC GGTACGCCAG
GTGATGATTG AAGCTCGAAT TGTTGAGGCC AACGTTGATT ATGACAAGGC TCTTGGCGTG
CGCTGGGGGG GGTCTGTGCG TAATGGTGCT TGGGATGTTA GTGGCAAGGA TGGCGTGCAA
GGATTTGATA AGGATACCGG AGTAAGGGCG CCGTTCGTCG GCACTGATAC AATCGGACGT
ACTACCTTGG AAGATGGTTT GGCGCGGCTT CCATTCGTTG ATATGGGGGT CCAAAACAGT
ACTTCCGGTA TTGCCATCGG CTATCTGGGC AGCAATATTG TGTTGGATCT GCAGCTGTCT
GCAATGGAGA AAACTGGTAA CGGCGAAATT GTCTCGCAGC CGAAAGTGGT TACCTCTGAT
AAAGAGACTG CGAAGATCTT GAAAGGGCAA GAGGTTCCTT ATCAGGAGGC TAGTTCGAGT
GGCGCGACTA GTACATCCTT CAAAGAGGCT GCGTTGGCCT TGGAAGTGAC CCCGCAGATC
ACTCCAGATA ACCGCATTAT CATGGAGGTT AAGGTCACGA AAGATGCTCC TGACTTCGCC
AATCTGGTCA ATGGTGTGCC TCCGCTTAAC AAGAACGAGG TTAACGCCAA GGTACTGGTC
AACGATGGTG AAACCATCGT GATCGGTGGC GTATTCTCCA ATACCCAGAC AAATGCGGTT
GAGAAGGTGC CATTCTTGGG CGACCTGCCG TTCTTGGGGC GCGTTTTCCG TCGGGACATT
GTCCGGGACA ACAAGGCCGA GTTGCTGGTT TTCATCACTC CGCGCATCAT GAACAACCAA
GCCATTGCCG TGAACCGATG A
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| Protein sequence | MNSSLSRLSV AVLATLLSPA ILAANLQDLN VASLPGDRVE LKLSFDEPVT APRGYTIEQP
ARIALDLPGV SNKLGAKNRE LGVGNARSVT IVEAKDRTRL IVNLTSLAPY STRVEGNDLY
VLVGDSSASV TRSSASAPAA VAAVPPKKTY GPQPKAINNI DFQRGEQGEG NIVITLSDAS
VSPDIQEQGG KIRLDFAKTE LPESLRVRLD VKDFATPVQF VSATGSADKT SILVEPVGLY
DYLAYQTENK LTLSVKPLTQ DDVERRKAER FAYTGEKLSL NFQDIDVRSV LQLIADFTDL
NLVASDTVAG NITLRLQNVP WDQALDLVLK TKGLDKRQIG NVLLVAPADE IAARERQELE
SQKQIAELAP LRRELIQVNY AKATDMAKLF QSVTSADGTP DSRGSITVDD RTNSIIAYQT
QERLDELRRI VAQLDIPVRQ VMIEARIVEA NVDYDKALGV RWGGSVRNGA WDVSGKDGVQ
GFDKDTGVRA PFVGTDTIGR TTLEDGLARL PFVDMGVQNS TSGIAIGYLG SNIVLDLQLS
AMEKTGNGEI VSQPKVVTSD KETAKILKGQ EVPYQEASSS GATSTSFKEA ALALEVTPQI
TPDNRIIMEV KVTKDAPDFA NLVNGVPPLN KNEVNAKVLV NDGETIVIGG VFSNTQTNAV
EKVPFLGDLP FLGRVFRRDI VRDNKAELLV FITPRIMNNQ AIAVNR
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