| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0143 |
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| Symbol | |
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| ID | 5106823 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 143606 |
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| End bp | 145189 |
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| Gene Length | 1584 bp |
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| Protein Length | 527 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640501359 |
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| Product | cytochrome-c oxidase |
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| Protein accession | YP_001185649 |
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| Protein GI | 146305184 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
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| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGCAG TGATCGACCA CGGTCATACT GACCACCACC ATGGCCCGGC CAAGGGCCTG
ATGCGCTGGG TGCTGACCAC CAACCACAAG GACATCGGCA CGATGTACCT GTGGTTCAGC
TTCTGCATGT TCCTGCTGGG CGGCTCGATG GCCATGGTCA TCCGTGCCGA GCTGTTCCAG
CCGGGTCTGC AGATCGTGCA GCCGGAATTC TTCAATCAGA TGACCACCAT GCACGGTCTG
ATCATGGTCT TCGGCGCGGT GATGCCGGCC TTCGTCGGCC TGGCCAACTG GATGATCCCG
CTGATGATCG GCGCGCCGGA CATGGCCCTG CCGCGGATGA ACAACTTCAG CTTCTGGCTG
TTGCCGGCGG CCTTCGGTCT GCTGGTCTCG ACGCTGTTCA TGGAAGGTGG CGGGCCCAAC
TTCGGCTGGA CCTTCTACGC CCCGCTGTCG ACCACCTACG GGCCGGAGAG CACCACCTTC
TTCATCTTCG CAGTGCACCT GATGGGCATC AGCTCGATCA TGGGGGCGAT CAATGTGGTC
GCCACCATCC TCAACCTGCG CGCCCCCGGC ATGACCCTGA TGAAGATGCC GCTGTTCGTC
TGGACCTGGC TGATCACCGC CTTCCTGCTC ATCGCGGTGA TGCCGGTGCT GGCCGGCTGC
GTGACCATGA TGCTGATGGA CATCCACTTC GGCACCAGCT TCTTCAACGC CGCCGGTGGT
GGTGATCCGG TCCTGTTCCA GCACGTGTTC TGGTTCTTCG GCCACCCCGA GGTGTACATC
ATGATCCTGC CCGCCTTCGG TGCGGTCAGC TCGATCATTC CGGCCTTCGC GCGCAAGCCG
CTGTTCGGCT ACACCTCGAT GGTCTATGCC ACCGCGGCGA TCGCCTTCCT GTCGTTCATC
GTCTGGGCGC ACCACATGTT CACCGTCGGC ATCCCGCTGA CCGGCGAGCT GTTCTTCATG
TACGCCACCA TGCTGATCGC CGTGCCCACC GGGGTGAAGG TATTCAACTG GGCCAGCACC
ATGTGGCAGG GCTCGATGAC CTTCGAGGCG CCGATGCTGT TCTCGGTGGC CTTCGTCATC
CTGTTCACCA TCGGCGGCTT CTCCGGGCTG ATGCTGGCCA TCGCCCCGGC GGACTTCCAG
TACCACGACA CCTACTTCGT GGTGGCGCAC TTCCACTACG TGCTGGTGCC CGGGGCGATC
TTCGGCATCT TCGCCTCGGC CTACTACTGG CTGCCGAAGT GGACCGGCCA CATGTACGAC
GAAACCCTGG CCAAGCTGCA CTTCTGGATG AGCTTCATCG GCATGAACCT GGCGTTCTTC
CCCATGCACT TCGTCGGCCT GGCCGGCATG CCGCGGCGCA TTCCCGACTA CAACATGATG
TTTGCCAACT TCAACATGGT GTCGAGCATC GGTGCCTTCC TGTTCGGAGC GACCCAGCTG
CTGTTCCTGT TCATCGTCAT CAAGTGCATC CGTGGCGGCA AACCGGCCCC GGCCAAGCCC
TGGGATGGTG CCGACGGGCT GGAGTGGACG GTGCCTTCGC CGGCGCCCTA TCACACCTTC
AGCACCCCAC CGGAAGTGAA GTAG
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| Protein sequence | MSAVIDHGHT DHHHGPAKGL MRWVLTTNHK DIGTMYLWFS FCMFLLGGSM AMVIRAELFQ
PGLQIVQPEF FNQMTTMHGL IMVFGAVMPA FVGLANWMIP LMIGAPDMAL PRMNNFSFWL
LPAAFGLLVS TLFMEGGGPN FGWTFYAPLS TTYGPESTTF FIFAVHLMGI SSIMGAINVV
ATILNLRAPG MTLMKMPLFV WTWLITAFLL IAVMPVLAGC VTMMLMDIHF GTSFFNAAGG
GDPVLFQHVF WFFGHPEVYI MILPAFGAVS SIIPAFARKP LFGYTSMVYA TAAIAFLSFI
VWAHHMFTVG IPLTGELFFM YATMLIAVPT GVKVFNWAST MWQGSMTFEA PMLFSVAFVI
LFTIGGFSGL MLAIAPADFQ YHDTYFVVAH FHYVLVPGAI FGIFASAYYW LPKWTGHMYD
ETLAKLHFWM SFIGMNLAFF PMHFVGLAGM PRRIPDYNMM FANFNMVSSI GAFLFGATQL
LFLFIVIKCI RGGKPAPAKP WDGADGLEWT VPSPAPYHTF STPPEVK
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