Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0098 |
Symbol | |
ID | 5106283 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 95546 |
End bp | 97078 |
Gene Length | 1533 bp |
Protein Length | 510 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640501314 |
Product | Fis family transcriptional regulator |
Protein accession | YP_001185604 |
Protein GI | 146305139 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTTCGC TTAACCCCTC GCTGATGTTC AGCCAGATCC CCCAGCCGCT GCGCTATGCC GAGGCGCTGT TGCAGCGCTT CGCCCAACTG GCCCGCCATG CCAGCGCCGA CGCTCTGCTC GGCGGGCTGG TGGAAGCCGC CGCGCAGCTG TCTGCCAGCG AGCTGAGCCA GCTGTACCTG CTCGACGCCA CCCACACCCG CCTGACCCTC AGCGCCGAGT GGCAGGACGG CCAACTGCAA CGCCGTGCCG AGGCCAGCCT GCCCAGCGAC TATGACGGCG AACAGTTGCT GCAGTACTGC CTGTGCCAGA ACCAGCTGCT CAGCCTCACC GAGCTGGATA GCAGCCTGCA CAGCATCGGC TTCCTCCCGG AAAGCGGCCA GCCCTGGCGC AGCCTGCTGT GCCAGCCGCT GTTGGACGAA CACCGGCAGG TCAATGGCTT GCTCCTCATC GCCAGCCACA AGCCCCGCGA GCTGCAGGGC TTCGCCGGAT CCCTGGGTCA GCTCGGCGGC TTCGCCATTG CCCAGTTGCA CCTGCTGCAG CGCCTGCGAG CACCGCAGAG CGAGGCCGCA ACACAACCGA CTCCAAGCTG CGCCAGCGGC TACGGTCTGA TCGGCGACAG CCCGGCGATG CGCAACGTGT ACCAGCTGAT CGGCAAGGTC CTGCACAACT CGGTCAGCGT TTTGCTGACG GGCGAAACCG GTACCGGCAA GGAGCTGGTG GCGCGTGCTA TCCATGACTG TGGCTCCCGT CGCAGCAAAG CCTTCGTGGT GCAGAACTGC GCCTCGTTGC CGGAAAACCT GCTGGAAAGT GAGCTGTTCG GCTACCGCAA GGGCGCCTTC AGCGGCGCCG ACCGCGACCA TCAGGGCCTG TTCGATGCGG CCAATGGCGG CACCCTGTTC CTCGATGAAA TCGGCGATAT GCCGCTGAGC CTGCAAGCCA AGCTGCTGCG CGTGCTGCAG GAGGGTGAAG TGCGCCCGCT CGGTTCGACC CGCACGCACA AGGTCGATGT GCGCATCGTC TCGGCCACGC ACCACAATCT GCGCAGCCTG GTCGAGGAAG GCCGCTTTCG CGAAGACCTG TTCTATCGCC TGTCGCACTT CCCCATCGAG CTGCCGCCAC TGCGCGCCCG CGGTGAGGAC ATCCTGCGCC TGGCGCGGCA CTTCGCCGTC GAGGCCGCGT GCTTCCTGCA GCGCGATGCC TATCGCTGGT CGGAAGCGGC GCTGGAGCAC CTGGCCGGTT ACGCCTTCCC CGGCAACGTG CGCGAACTCA AGGGCCTGAT CGCGCGCGCC GTGCTGCTGT GCGAGGGCGG CGAGCTGCTG CCCGAGCATT TCAGCCTGGA GCAGACGCCG AGCGAAGGCA GCGCACCGCT GAGCCTGCGC GAGCGCATGG ACCGGGTCGA ACGCAATCTG CTGCTCGACT GCCTGCGCAA GAACCGCGGC AACCAGACCA ATGCCGCCAA CGAGCTGGGC CTGCCCCGGC GCACCCTGCT GTACCGCATG CAGCGGCTGA AGATCAGCCC GAGCGAGGTC TGA
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Protein sequence | MSSLNPSLMF SQIPQPLRYA EALLQRFAQL ARHASADALL GGLVEAAAQL SASELSQLYL LDATHTRLTL SAEWQDGQLQ RRAEASLPSD YDGEQLLQYC LCQNQLLSLT ELDSSLHSIG FLPESGQPWR SLLCQPLLDE HRQVNGLLLI ASHKPRELQG FAGSLGQLGG FAIAQLHLLQ RLRAPQSEAA TQPTPSCASG YGLIGDSPAM RNVYQLIGKV LHNSVSVLLT GETGTGKELV ARAIHDCGSR RSKAFVVQNC ASLPENLLES ELFGYRKGAF SGADRDHQGL FDAANGGTLF LDEIGDMPLS LQAKLLRVLQ EGEVRPLGST RTHKVDVRIV SATHHNLRSL VEEGRFREDL FYRLSHFPIE LPPLRARGED ILRLARHFAV EAACFLQRDA YRWSEAALEH LAGYAFPGNV RELKGLIARA VLLCEGGELL PEHFSLEQTP SEGSAPLSLR ERMDRVERNL LLDCLRKNRG NQTNAANELG LPRRTLLYRM QRLKISPSEV
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