Gene Plim_4194 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlim_4194 
Symbol 
ID9140915 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePlanctomyces limnophilus DSM 3776 
KingdomBacteria 
Replicon accessionNC_014148 
Strand+ 
Start bp5363106 
End bp5363642 
Gene Length537 bp 
Protein Length178 aa 
Translation table11 
GC content54% 
IMG OID 
ProductTetratricopeptide TPR_2 repeat protein 
Protein accessionYP_003632201 
Protein GI296124423 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0720467 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTCTACA ACCCGCGACG AATTCGAGAA CGCAGGCTCG ATGCAGCCCG AGGGTATCTG 
TTGCTGGAAA TGCCTCAGCC AGCCCTTGCC GAGCTGGCAC AAATTCAAGA TCCCGGCCCG 
CAGAAGTTTG AATTCCATCT GCTGAAAGGC GAATGCTTCC GTGCTCTAAA ACGACACGAG 
GAAGCGTTAA GCGAGTTTGA AGAAGCCCAC CATCTGCATC CCAGCGATCT CGATGTCCTC 
ATGGGGATGG CCTGGTGCTT CAAACGCACC AGCCAGTTAC TGCGGGCGAT TGACACGATG 
CATTCGGCAT ACGCCTCGCA TGCGGAAGAA CCAGTCGTCC TTTACAATCT TTCGTGCTAT 
TACGCACTGG TAGGGCAGCG TGAACAGGCT TTGAGCTGGC TGGGCCGGGC TTTGCGGATG 
AATCGTGAAC TTTTGAAGCT CGTTCCTGAG GAAACGGATT TTGATCCAAT TCGCGAAGAT 
GCCGAGTTCC GTCTGCTGAT TCATCTGGCG GCTTCAAGCA AATCCGCTAC GAAATAG
 
Protein sequence
MVYNPRRIRE RRLDAARGYL LLEMPQPALA ELAQIQDPGP QKFEFHLLKG ECFRALKRHE 
EALSEFEEAH HLHPSDLDVL MGMAWCFKRT SQLLRAIDTM HSAYASHAEE PVVLYNLSCY 
YALVGQREQA LSWLGRALRM NRELLKLVPE ETDFDPIRED AEFRLLIHLA ASSKSATK