| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_3872 |
|---|
| Symbol | |
|---|
| ID | 9140590 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 4979192 |
|---|
| End bp | 4980157 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | |
|---|
| Product | Metal-dependent hydrolase HDOD |
|---|
| Protein accession | YP_003631883 |
|---|
| Protein GI | 296124105 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.383725 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAACA TTGACTGGAG CGCAATTCGC GAAAAGGCGA TGGGGCCTTT TCAATTGTCG
GTTCTGCCTC CCACTCTCGA ATTGCCGGCA TTGCCGCATG CGGTCGCAGC ATTTCTGGAT
CGTTCACGAG ACGAACAGAC CGAAATGCGG GAACTCTCTT CGATCATCGA GACCGACTCT
GGTTTGACAG TCGAACTGCT GCGCTATGCC AACTCGTCGT TCATTGGTCT GCGAACGAAA
GTGCGGACCG TCCTCCAGGC TCTGTCGATC CTCGGTTTTC GCCAGAGTAA ACTTTTCGTG
CTGACCAGTG GTGCTCAGGC AGCGATTCGC TCCCGAAAAT CAAAGCTCAT CCATCAGGCG
AGCTTCTGGA ATACCAGCCT GCAGCGAGCC CTCTTCGCCC GGGAAGTCGC CAGGCTGTTA
GGTGCCGACG AAGATGGTGC CTTCGCCGGA GCCGTCATGC AGGATTTTCT ACTCCCCGTC
CTGACCAATG ATCTCTTCGA CCGCTATGCA CCCTTCACCA GCGACCGCGT GGCACAACCC
GATGGGCTCG ACGAATACGA ACAGCGGGAG TTCGGCTGGG ATCACGCACT GATTGCGGCT
GGTCTGGCCA CCCGCTGGAA ACTTCCCGAC GATCTGATCT GTGGCATTCT CATGCATCAC
AAAGGCTTGA GACTCCTGGC AGATCCGATC CTGAGACGCA CCTCTGTAGC TGCCATTGCC
ATTTCGTCAT TACTCCCCGA TGGTCTCAGG CAGCAGTACT CGGGTCTCGA TCAACTGGTG
TTGCTCGAAA CCAAGTGGAG TGCCTTCAAA CTCGCCGAGA TCATTCAGAA GGTCGACACC
GCTCACCAGG CCCTGGGCCT CGGCGTGCGT AACGACTACC CCCTGTCGCG GATCTGCCGT
ACGGCCCTGG AACATTCGGT CGTTCCCGAA CTCTCACAAC AGGTCGCCAG CCAGCTCCCC
GCCTGA
|
|---|
| Protein sequence | MSNIDWSAIR EKAMGPFQLS VLPPTLELPA LPHAVAAFLD RSRDEQTEMR ELSSIIETDS
GLTVELLRYA NSSFIGLRTK VRTVLQALSI LGFRQSKLFV LTSGAQAAIR SRKSKLIHQA
SFWNTSLQRA LFAREVARLL GADEDGAFAG AVMQDFLLPV LTNDLFDRYA PFTSDRVAQP
DGLDEYEQRE FGWDHALIAA GLATRWKLPD DLICGILMHH KGLRLLADPI LRRTSVAAIA
ISSLLPDGLR QQYSGLDQLV LLETKWSAFK LAEIIQKVDT AHQALGLGVR NDYPLSRICR
TALEHSVVPE LSQQVASQLP A
|
|---|
| |