Gene Plim_0903 details

Gene Information

• Locus tag: Plim_0903
• ID: 9137588
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: +
• Start bp: 1157184
• End bp: 1159277
• Gene Length: 2094 bp
• Protein Length: 697 aa
• Translation table: 11
• GC content: 56%
• Product: Squalene cyclase-like protein
• Protein accession: YP_003628946
• Protein GI: 296121168

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAGATC TCACCCAAAA ACTTCAGCAA GCCTTACAGC TCGCCTCCCG AGCACTGCTG 
AATGAGCGTG TGCGACCTGG CCTGGCCCAT TGGGAAGGCG AACTCTCGAC CTCGGCATTA 
TCCACAGCCA CAGCTGTAAT GGCCTTGTTT CAGTATGCCA AATGCCAACA GGCCAGTGGG 
CGTCTGCAAA AGGTGTTCGA TGGGAAGTCT GAAGGCGACT GGCGACTGAT CGAACAAGGT 
CTGGCGTGGC TCCTTCAGCA TCAGCTGGCC GACGGCGGCT GGGGCGATAC TGACAAAAGT 
ATCTCGAACA TCAGTACCAC CATGCTCGCC CATGCCACGC TGGTCGCTTG CCGGGAAGCT 
GTCAGACAAA AAAGTCTGGT GCTGAACGCC AGCGATATCG ACGCCGCCAT TGAGCGGAGT 
GGCCGATTGA TCGAAGAGTT GGGGGGCATT CAGGCGATTC GTGATCGATA CGGGAAAGAT 
CACACGTTTT CAGTCCCTAT CCTGACCCAT GCGGCACTGG CTGGGCTGGT GTCATGGAAT 
GAGATCCCCG CACTCCCTTA TGAACTGGCA CTGTTGCCGC ATCGCTTTTT CGAGGTCATT 
CAGCTCCCGG TCGTTTCGTA TGCCTTACCC GCTCTGATTG CGATCGGGCA GACGCTGCAT 
TTGAGGCAGC GCACGTGGAA CCCGTGGTGG TGGGTGCGGC GAGCCGCCAT TCCGGGCACA 
TTGCAGAAAT TGCAGAGTAT TCAGCCGGAA AGTGGAGGTT TTCTCGAAGC GACTCCACTG 
ACGAGTTTCG TCACGATGTG CCTAGCGAGT GTCGGACGTG TCGATCATCC CGTCACACAG 
GCAGGGCTTA AGTTTATTCG TGATTCCGTC CGGCCCGATG GAAGCTGGCC CATCGATACC 
AATCTGGCCA CGTGGGTCAC CACACTTTCG ATCAATCATC TGGGGGCTGA GGCCTTTTCG 
TCGGACGAGC GTGAAGCTCT GATGCGCTGG TTGTTACAGC AGCAGTATCG AACTATGCAC 
CCCTATACGA ATGCTGCTCC CGGCGGATGG GCCTGGACGA ATCTTTCGGG GGGTGTTCCC 
GATGCTGACG ATACCCCCGG AGCCATGCTG GCTCTGATGG AACTCGACCG GGTTTCTGTT 
TCCTCGCAAG AGAGTCTTTC GATTGAACAG GCCCTCTATC AGGCTGCGCT GTGGCTGATC 
AAGCTGCAGA ATCGCGATGG TGGCTGGCCG ACTTTCTGCC GAGGTTGGGG AGCACTCCCT 
TTTGACCGCA GTTCGAATGA TATCACTGCC CATTGCCTGC GGGCGCTGAT TCAATATGAA 
CGCAGGCTCA ATGACGTCAC TGTTGATGCC ACTGGCGATA CCACTTCCAG ACCACTCGCA 
GTCGAAGTGC CATCCCCAAA GTTGCGAGAG CAGATGCAGC GAAGCATTCA GCAAGGCTTT 
GAGTATCTCG AAAAGACGCA GCGGGAAGAT GGGTCTTGGC TGCCATTATG GTTTGGCAAT 
CAGCACAGCC CCGATGATGA AAACCCCTTG TACGGCACGG CACGAGTGCT CCTGGCCTAT 
GCTGATGCCG GTCTTGAAGG AAGCTCGGCA GCTTTACGCG GCTGTGACTG GCTGGTGAGA 
CATCAACATG CGGATGGTGC CTGGGGGCCC GGTACATCCA TAGAAACTGC TGATACCTCC 
GATGCCGAGT CCGATGTCGA AGGAGAACCC GCGAGTATCG AAGAGACGGC TCTCGCCTTG 
ATGGCTCTTT GTCGCTTCGA CGCTACTCAT AACGTCCTGC ATCGCGGCGC TTCGTGGCTC 
ATTACAAAGG TTGAAAACGA GACCTGGCGC GAACCGACGC CGATTGGTTT TTACTTTGCA 
AAACTCTGGT ACTACGAAAA ACTCTATCCG CAGGTCTTTA CGGTCGGTGC ACTCAAAGCT 
CTGGCACTGC GACTGGGTTC AGCGTTGACG ACAGTCTCGG AGAATGAACC TGCTCCCAGT 
TCTGCGGAAC CACCGATTCC GCCCATTGCG ACTGATCGAG TGGCTGACTC AATGCATCTT 
CAGCGAACAT CACCTTCGAT CAATCTAGCG AATGGGGGCA TCACCCTGGC TTGA 

 

Protein sequence

MEDLTQKLQQ ALQLASRALL NERVRPGLAH WEGELSTSAL STATAVMALF QYAKCQQASG 
RLQKVFDGKS EGDWRLIEQG LAWLLQHQLA DGGWGDTDKS ISNISTTMLA HATLVACREA 
VRQKSLVLNA SDIDAAIERS GRLIEELGGI QAIRDRYGKD HTFSVPILTH AALAGLVSWN 
EIPALPYELA LLPHRFFEVI QLPVVSYALP ALIAIGQTLH LRQRTWNPWW WVRRAAIPGT 
LQKLQSIQPE SGGFLEATPL TSFVTMCLAS VGRVDHPVTQ AGLKFIRDSV RPDGSWPIDT 
NLATWVTTLS INHLGAEAFS SDEREALMRW LLQQQYRTMH PYTNAAPGGW AWTNLSGGVP 
DADDTPGAML ALMELDRVSV SSQESLSIEQ ALYQAALWLI KLQNRDGGWP TFCRGWGALP 
FDRSSNDITA HCLRALIQYE RRLNDVTVDA TGDTTSRPLA VEVPSPKLRE QMQRSIQQGF 
EYLEKTQRED GSWLPLWFGN QHSPDDENPL YGTARVLLAY ADAGLEGSSA ALRGCDWLVR 
HQHADGAWGP GTSIETADTS DAESDVEGEP ASIEETALAL MALCRFDATH NVLHRGASWL 
ITKVENETWR EPTPIGFYFA KLWYYEKLYP QVFTVGALKA LALRLGSALT TVSENEPAPS 
SAEPPIPPIA TDRVADSMHL QRTSPSINLA NGGITLA