| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3485 |
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| Symbol | |
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| ID | 5455405 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3730928 |
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| End bp | 3732352 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640879070 |
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| Product | DNA repair protein RadA |
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| Protein accession | YP_001414741 |
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| Protein GI | 154253917 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1066] Predicted ATP-dependent serine protease |
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| TIGRFAM ID | [TIGR00416] DNA repair protein RadA |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 0.692018 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCGCG CATCACGCAC ATTTGTCTGT CAGGCTTGCG GGGCGGTGAC GGCCCGCTGG
GCGGGGCGGT GCGAGAGTTG CGGCGAGTGG AACACCATCG TCGAGGAGGC GCCCGACAGC
GCCGGCGTCG GCGGCGGGCC GCAGAAATCG CTCGCAGGCG CGCGGGCGAA GGGGCGGAAG
ATCGAACTCG TCGCGATGAG CGGCGAGACG GCCGACCCGC CGCGCCATGT GACCGGCGTC
GGCGAATTCG ACCGGGTGAC GGGCGGCGGG CTGGTGCCGG GCTCGGCACT GCTGATCGGA
GGCGATCCGG GCATCGGCAA GTCGACGCTG CTTTTGCAGG TGATGGCGGC GCTGGCGCGG
AAAGGAAAAT CCGTCGTCTA TATTTCCGGC GAAGAGGCAA TTGCGCAGGT GAGGATGCGG
GCGCGCAGGC TCGGGCTTGC GGATGCCGAA GTGCAGCTCG GCGCGGAGAC GAACCTCAAG
GACATCATCG GCACGCTGGA AAGCGGACAG GCGCCGGACG CGGTGGTGAT CGACTCCATC
CAGACGATGT GGACGGATGT GCTGGAATCC GCGCCCGGCA CGGTGGCGCA GGTGCGCGCC
TCGGCGCAGG AGCTTGTGCG CTTTGCAAAG AAGCGCGGGT CGGCCGTCAT TCTCGTCGGC
CATGTGACCA AGGAAGGCCA GATCGCGGGG CCACGAGTCG TCGAGCACAT GGTCGATGCG
GTGATCTATT TCGAAGGCGA GCGCGGACAC CAGTTCCGCA TCCTGCGGGC GGTGAAGAAC
CGCTTCGGAC CGGCAAACGA AATCGGCGTG TTCGAGATGG GGGAAATGGG GCTCGCCGAA
GTGCCGAACC CATCGGCGCT CTTTCTCGGC GAGCGCGACG GGGAGACGAG CGGCTCGGCG
GTCTTTGCCG GGATCGAGGG GACGCGGCCG GTGCTGGTCG AAATCCAGGC GCTGGTGGCG
CAAAGTTCGC TCGGCACGCC GCGCCGGGCG GTTGTCGGCT GGGACGGGGG GCGGCTTTCC
ATGATCCTCG CGGTGCTGGA GGCGCGGTGC GGCCTCTCGC TGGCGGGGCA GGATGTTTAC
CTCAATGTGG CGGGCGGATT GCGAATCAAC GAGCCGGCGG CGGACCTTGC GGTGGCGGCG
GCGCTTGTTT CATCCGTTTC GGGGATGCCG CTGCCGCCCG ATTGCGTCAT TTTCGGCGAA
ATCAGCCTTT CGGGCGCCGT GCGGCCCGTG AACCAGATGG ATGCTCGGCT GAAAGAGGCG
GAAAAGCTGG GCTTTACGCG GGGCATCATT CCCGCCAGCG CGGCGCGGAC AAGGCCTTCC
ACGGCGCTGA AATTTACTGA AATTTCGGAC CTTGCGGGGC TTATAGCCCA TCTCACGGCG
GGGGACGGCA AGGGCAAGGG CGACCGCCGG GCACGCGATG TGTGA
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| Protein sequence | MARASRTFVC QACGAVTARW AGRCESCGEW NTIVEEAPDS AGVGGGPQKS LAGARAKGRK
IELVAMSGET ADPPRHVTGV GEFDRVTGGG LVPGSALLIG GDPGIGKSTL LLQVMAALAR
KGKSVVYISG EEAIAQVRMR ARRLGLADAE VQLGAETNLK DIIGTLESGQ APDAVVIDSI
QTMWTDVLES APGTVAQVRA SAQELVRFAK KRGSAVILVG HVTKEGQIAG PRVVEHMVDA
VIYFEGERGH QFRILRAVKN RFGPANEIGV FEMGEMGLAE VPNPSALFLG ERDGETSGSA
VFAGIEGTRP VLVEIQALVA QSSLGTPRRA VVGWDGGRLS MILAVLEARC GLSLAGQDVY
LNVAGGLRIN EPAADLAVAA ALVSSVSGMP LPPDCVIFGE ISLSGAVRPV NQMDARLKEA
EKLGFTRGII PASAARTRPS TALKFTEISD LAGLIAHLTA GDGKGKGDRR ARDV
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