| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3461 |
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| Symbol | |
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| ID | 5455912 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3705111 |
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| End bp | 3706628 |
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| Gene Length | 1518 bp |
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| Protein Length | 505 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640879047 |
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| Product | thymidine phosphorylase |
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| Protein accession | YP_001414718 |
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| Protein GI | 154253894 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02645] putative thymidine phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 0.592088 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTGCCC GCATCACTCC CCAGACACCC GCCTTGCAAG CATTGCGCAT GCGACTGCAT
GCCCAGCATC AACCCGTCGT CTTGATGCGT ACCGATTGCC ATGTCTGCCG TGCCGAAGGG
CTGGCACCGC GGTCACAGGT ACTGATCATT GCCGGCGACC GCACTGTGCA AGCGCTACTG
TACCAAATCG ACAGCGATCT GCTCAAAACC GGACAGATCG CTCTGTCCGA GGCCGCCTGG
GATGCCCTGG ACATTCATGA GGGCGATCTT GTGCAGGTTC GGCATCCTCC GCTGCTCGAA
TCGTTGTCGG CCGTGCGTGC GCGAATTCAC GGCCACCGAC TGCAAACGAC GGAGTTGCAG
GCGATCGTCC GTGATGTGGT CGATGGTCGC TATACCGATG TCGCACTTTC GGCCTTCCTG
ACCGCAACGG CGGTACTGCC TCTGGATATG CAAGAGACCA TCCATCTCAC CCGTGCGATG
GTCGATGTCG GAGATCACCT GCAATGGCAG GCTCCGATTG TTGTGGACAA GCATTGCGTG
GGCGGATTAC CGGGAAATCG CACCACGCCG TTGGTGGTTG CCATCGCCGC AGCCAATGGA
TTGGTGATGC CCAAGACCTC ATCACGCGCC ATCACCTCTC CCGCTGGCAC CGCGGACACC
ATGGAAACGC TGGCTCCTGT AGACCTGGAC CTGGATACGC TCAGAAAGGT CGTGGAGAAA
GAGGGTGGAT GCGTGGCGTG GGGCGGCGCG ATGCACCTCA GCCCCGCGGA CGACATCTTC
GTGCGTATTG AGCGTGAACT GGATATCGAC ACGCAAGGAC AACTGATTGC CTCGGTGTTA
TCCAAGAAGA TTGCAGCAGG GGCGACCCAC ATCGTGATCG ATATTCCGGT TGGGCCAACC
GCAAAAGTCC GCAGCCGGGA AACTGCCGAG CATCTTGCGC ATCACCTTTC GGAAGTCGCC
GCGTCATTTG GCCTTGTATT GCGTTGCCTG TTTACAGACG GGAATCAGCC TGTCGGCAGA
GGTATCGGCC CGGCGTTGGA GGCGCGCGAC GTGTTGGCCG TATTGCGCAA CGAGGCGGAT
GCGCCGCAAG ACCTATGTGA CCGCGTGGCG TTGGTCGCGG GTGCGGTACT TGAGCTTGGC
GGCGTCGCCA AAGAAGGGGA TGGAATTCGA TTGGCTCACG AGACGATCAG CAGTGGCCGC
GCCTGGGAAA AATTTCAGAG GATCTGTGCC GCTCAGGGGG GATTTCGTGA GCCACCCCAA
GCTCTTTACG TCGAACCGCT TTTGGCAACC ACTTCAGGCC GAGCAGTACA CATCGACAAC
CGTAAGCTGT CCCGTTTAGC CAAATTAGCC GGAGCGCCTG AGAGTCCAGC CGCAGGGATT
CAATTGCAAG TGCGCTTAGG TGACGAGGTA ACACGCGGAC AATCATTGAT GTTTTTGCAT
GCGCAAACCT CTGGAGAGAT GGCCTATGCA CTCGCATACG TGCATGACAT TGGTGACATC
GTAAAGATTG AACCTTAG
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| Protein sequence | MSARITPQTP ALQALRMRLH AQHQPVVLMR TDCHVCRAEG LAPRSQVLII AGDRTVQALL
YQIDSDLLKT GQIALSEAAW DALDIHEGDL VQVRHPPLLE SLSAVRARIH GHRLQTTELQ
AIVRDVVDGR YTDVALSAFL TATAVLPLDM QETIHLTRAM VDVGDHLQWQ APIVVDKHCV
GGLPGNRTTP LVVAIAAANG LVMPKTSSRA ITSPAGTADT METLAPVDLD LDTLRKVVEK
EGGCVAWGGA MHLSPADDIF VRIERELDID TQGQLIASVL SKKIAAGATH IVIDIPVGPT
AKVRSRETAE HLAHHLSEVA ASFGLVLRCL FTDGNQPVGR GIGPALEARD VLAVLRNEAD
APQDLCDRVA LVAGAVLELG GVAKEGDGIR LAHETISSGR AWEKFQRICA AQGGFREPPQ
ALYVEPLLAT TSGRAVHIDN RKLSRLAKLA GAPESPAAGI QLQVRLGDEV TRGQSLMFLH
AQTSGEMAYA LAYVHDIGDI VKIEP
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