Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_3114 |
Symbol | |
ID | 5455038 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 3325492 |
End bp | 3326298 |
Gene Length | 807 bp |
Protein Length | 268 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640878704 |
Product | TatD family hydrolase |
Protein accession | YP_001414378 |
Protein GI | 154253554 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0084] Mg-dependent DNase |
TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 0.677659 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 0.341817 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACGCTGC CCGTTCTCAT CGACAGCCAT TGCCATCTCG ACTTTCCCGA TTTCGGGGCG GAGGTCGAGG AGGTGGTGGC GCGCGCGCAT GAGGCGGGCG TGGGGCTGAT GGTGACGATC TCGACCAAGG TGAGCGAGTT CGACCGGGTG AGGGCGGTGG CGGAGCGGTT TCCCCATGTC TATTGCACGG TCGGCATCCA TCCGCATGAG GCGGCGAGCG AGCCGGAGAC GGATAAGGCG ACGCTGATCG AAATGGCGAA GCATCCGAAG GTCGTCGGCA TCGGTGAGAC GGGGCTCGAC TATTACTATG AGCACAGCCC CCGCGAGGCG CAGAAGCGGA ATTTCCGCTC GCATATCGCG GCGGCGCGCG AGACGGGGCT GCCGCTGATC GTGCATACGC GCGACGCGGA TGAGGACATG GCTCAGATAC TGGATGAAGA AACGGGGAAG GGGGCTTTTC CGGGGCTGCT GCATTGCTTC AGCTCCAGCC CGCAACTCGC TGAAAAGGCT CTGGCACTCG GGCTCTACAT CTCGCTTTCC GGCATCGTGA CCTTCAAGAG CGCCGAAGAA TTGCGCGCGA CGGCGGCGAC GGTGCCGATG GACCGGCTGC TGGTGGAGAC GGATGCGCCT TACCTGGCGC CGGTGCCGAA GCGCGGCAAG CGGAACGAAC CCGCCTTCGT GGTGCATACG GCGGCGAAGG TGGCGGAGAT CAAGGCGGTG CCGGTGGAAG AGCTGGCGGC GGCGACGACG GCCAATTTCC TCAGGCTGTT CTCGCGCGTG CCGCCCGATG CGGTGTTGCG CGGATGA
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Protein sequence | MTLPVLIDSH CHLDFPDFGA EVEEVVARAH EAGVGLMVTI STKVSEFDRV RAVAERFPHV YCTVGIHPHE AASEPETDKA TLIEMAKHPK VVGIGETGLD YYYEHSPREA QKRNFRSHIA AARETGLPLI VHTRDADEDM AQILDEETGK GAFPGLLHCF SSSPQLAEKA LALGLYISLS GIVTFKSAEE LRATAATVPM DRLLVETDAP YLAPVPKRGK RNEPAFVVHT AAKVAEIKAV PVEELAAATT ANFLRLFSRV PPDAVLRG
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