Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2954 |
Symbol | |
ID | 5456733 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 3151901 |
End bp | 3153550 |
Gene Length | 1650 bp |
Protein Length | 549 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640878538 |
Product | alpha amylase catalytic region |
Protein accession | YP_001414218 |
Protein GI | 154253394 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.0067439 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | GTGTCGGCGG GACGGCAAGG TCAAGAACAA GAGGAAGCGG ACGTGGCGGG AGAGAAGAGC GAATGGTGGA AGGGCGCGGT GGTCTATCAG ATCTATCCGC GCAGTTTTCA CGATACAAAT GGCGACGGCA TCGGCGACCT GAAAGGCATC GAGGAAAAGC TCGACCATGT GGCGGGGCTG GGGGCGGACG CGATCTGGCT GTCGCCGATC TATCCCTCGC CCAATCGCGA TTTCGGCTAC GACGTTTCCG ACTATTGCGC GATTGCGCCC GAGATGGGCT CGATGGCGGA TTTCGACCGG CTGGTCGAGG CGGTGCATGG GCGGGGCATG AAGCTCATTC TCGACCAGGT GCTTGCGCAT ACATCCGAGC AGCATCAGTG GTTTCAGGAG AGCCAGCTCT CCGCCGACAA CCCGAAATCG GACTGGTATG TCTGGGCGGA TGCGAAGGAA GACGGGACGG TGCCGAACAA CTGGCTGTCG GCATTCGGCG GTCCGGCCTG GTCGTGGAAT CCGGTCAGGC GGAAGTACTA CCATCACAAG TTTCTGAAGA GCCAGCCAAA ACTCAACTTC CACAATGAGC AGGTGGTGGA TGCTTGCATG GATGTGCTGC GCTTCTGGCT CGACCGGGGC GTGGACGGGT TCCGGCTCGA TGTGGCGAAT GCCTATCTGC ACGATGCGGC GCTGACCGAC AATCCGCCGC TGCCGATGGA CAAGCGCACA TTCATGGACT GGGCGCATGC ACCGCGGCTG CAGCAGCATA TCCATGACGC GAACATGCCC GAGAACGAAT GGGCGATGAA GCGCGTGCGG AAGGTGATGG ACGAGTATGA GGAGCGGCTG GCCTTTGGCG AGTTTTCCGA GCGGCCCGAG ATGTTCGGGC GTTATGCGGG CGGTGTCGAA CGGTTGCATA CGGGGTATAC GTTCGATTTT CTGGAGGACT GGAGTTTCGA GCCGCCGGTG TTCCGCGCCT ATTACGAGAA GCTGCTGGCG CCGCTCAGCG ATCTTTTTCC CTGCGTGACG TTTTCGAACC ACGACATCGT GCGGCCGGTG ACGCGGTGGG GCGGCGGACA AGGCGATGAC GGGCTTGCGA AGCTGGCGCT GACGCTGCTC GTGGCGTTGC GCGGCACGGT GCTGATGTTC CAGGGCGAGG AGCTGGGACT GCCGGAGGTG GACCTTGAGC GGAAATACAT CAAGGACCCG GTGGGCGATC TCTATTTCCC GTGGGTGAAG GGGCGTGACG GCTGCCGGAC GCCGATGCCG TGGGAGAGCG GCGGGGCGGA GGCAGGCTTC ACCATCGGTA CGCCCTGGCT GCCGATACCG GATTATCACC GAATGCGGGC GGTGGATGTT CAGCAGGCGG ATGAAGGCTC CGTACTGGCG CATGCGAAGA AGGTTATCGC GCTGAGGAAG GCGCATCCGG CGCTGAAGAC GGGCGCGATG TCGTGTCTCG ACGCTGAGGG GAAGGTGCTC GCCTTCACAC GCGAGGGAGA AGGCGAGCGG CTGCTCTGCG TGTTCAATCT CGGCAAGGAG GCGGCGAGCT TCGATTTGCC GGAGAGTGCG GGCGCGGCGG TGTTCGAGGT TGGGGGCGTG ACACGGGATG CTGCGGCGCT GGCGCTTCAG CCGAGGAGCG GGGCGATCTT CAAGGTTTGA
|
Protein sequence | MSAGRQGQEQ EEADVAGEKS EWWKGAVVYQ IYPRSFHDTN GDGIGDLKGI EEKLDHVAGL GADAIWLSPI YPSPNRDFGY DVSDYCAIAP EMGSMADFDR LVEAVHGRGM KLILDQVLAH TSEQHQWFQE SQLSADNPKS DWYVWADAKE DGTVPNNWLS AFGGPAWSWN PVRRKYYHHK FLKSQPKLNF HNEQVVDACM DVLRFWLDRG VDGFRLDVAN AYLHDAALTD NPPLPMDKRT FMDWAHAPRL QQHIHDANMP ENEWAMKRVR KVMDEYEERL AFGEFSERPE MFGRYAGGVE RLHTGYTFDF LEDWSFEPPV FRAYYEKLLA PLSDLFPCVT FSNHDIVRPV TRWGGGQGDD GLAKLALTLL VALRGTVLMF QGEELGLPEV DLERKYIKDP VGDLYFPWVK GRDGCRTPMP WESGGAEAGF TIGTPWLPIP DYHRMRAVDV QQADEGSVLA HAKKVIALRK AHPALKTGAM SCLDAEGKVL AFTREGEGER LLCVFNLGKE AASFDLPESA GAAVFEVGGV TRDAAALALQ PRSGAIFKV
|
| |