Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2874 |
Symbol | |
ID | 5454828 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 3077497 |
End bp | 3078177 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640878456 |
Product | ribonuclease III |
Protein accession | YP_001414138 |
Protein GI | 154253314 |
COG category | [K] Transcription |
COG ID | [COG0571] dsRNA-specific ribonuclease |
TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 0.00509584 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGGTCGAT TGAACGCCGC GCTTCAAGTC CGTTTAGCCC ATGATTTCAA GGACTTGGGG CTTCTTTCTC GGGCGCTCAC TCATCCAAGC GCGGATGGCG CGAACTACCA GCGATTTGAA TTTCTCGGCG ACCGCGTGCT CGGTCTCGTC ATCGCGGACT GGCTGCTGCG CGATTTTCCG CAGGCGGATG AAGGCGAATT AGCCATTCGT TACAACGCGT TAGTCCGAAA GGAAGCCTGC GCGGAGGTGG CGGAACGGAT CGGCCTCGGC GCCTGCATCA CCATGGGTGC GGGCGAGGAA AAAGCCGGCG GAAGGCGGAA ACCCGCCATT CTTGCCGATG CCTGCGAGGC GGTGATCGCG GCGCTCTATA CCGATGGCGG ACTACAGGCG GCGCGGCGGT TCATCGAGAC GGAATGGGCC TATCTCGTTG AAAAGTCTAG CGAAATTCCG CAGGACGCGA AGACCGCATT GCAGGAATGG GCGCAGGCGC GCGGGCAAGG CGTGCCGACA TATACGCTGG TCGGCAGAAG CGGGCCGGAC CACGCACCGG AATTCACGGT CGAGGTCTCG GCCGGCAAGG CCAAGCCCTT GAGGGCACAA GGAAATTCCA AACGGCAGGC AGAGCAAACG GCCGCTCGCG CGCTGCTTGA AGCACTGGGC GTATGGCCCG CGAAGGACTG A
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Protein sequence | MGRLNAALQV RLAHDFKDLG LLSRALTHPS ADGANYQRFE FLGDRVLGLV IADWLLRDFP QADEGELAIR YNALVRKEAC AEVAERIGLG ACITMGAGEE KAGGRRKPAI LADACEAVIA ALYTDGGLQA ARRFIETEWA YLVEKSSEIP QDAKTALQEW AQARGQGVPT YTLVGRSGPD HAPEFTVEVS AGKAKPLRAQ GNSKRQAEQT AARALLEALG VWPAKD
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