| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2861 |
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| Symbol | |
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| ID | 5455979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 3065392 |
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| End bp | 3067806 |
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| Gene Length | 2415 bp |
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| Protein Length | 804 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640878443 |
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| Product | lytic transglycosylase catalytic |
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| Protein accession | YP_001414125 |
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| Protein GI | 154253301 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 0.343372 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCGAG GTCTTTCGCA TCGGGCTGTC CGGTGCGGTA GCGGCGATCC GGAGGCCCTT
CATCAGGAGA AGCCTCGGGC GGATCGGGAA CTTCGGATTT TTCGGGTTTT GCAGGTGGGC
TATTCGTCCC GGTTGAGTTA TTTCCCCGTT CTGGCTGCCC TCGTGGCGGC GAGCTTCGCC
TTATGCGCTG AAGCCGGCGC TTCCACCTTG CCCATACCCC GGCCCGACGC AGGCGATCCG
CCCGCACGCC TCTCGGTGGT ATCTAGCGCT CCCACCGCAG CCGCAACTCC CGGCAACACC
CTATCCCGCC TGGGCGCCGC TGAACTCGCG GCGCTACGCA ACGCCCTGTC TGAAGCGGAC
CGAGGCAACT GGAGCGCCGC CAGCCGGCAT ATGGCCGGGG TCTCCGATCC GGCTGCGATC
AAACTCGTCA CCTGGACGCG GCTCATCGCC GATAGCAGTA ATGCCACTTT TGCAGAACTG
GTCGCCTTTC GAGAGCAAAA CCACGACTGG CCGCGCCGTC ATGTGCTGGC TCTTCGGGCC
GAAACAGCAC TCCTCTCTTA TCCCATGTCC GCCGACGATG TAATTGCCTG GTTTAGCGCC
AATCCTCCCC AAACCGGCGA GGGACGCATC CGCTATGGCA AAACCCTGGT CGAGGCTGGC
CGCGAAAAAG AGGGCGCTGA ATGGATTCGC AAAGCATGGA TCGAGAATGA TTTTTCCACT
CGCCGCCAAC AGGAAATACT CAAATCTTTC GGGAAATATC TGACGGCAGA CGCGCAGCAA
TCAAGGCTTG CACGTCTCTT GTGGGAGCAG CGGACAGGCG ACGCGCAAAC GACGGCTGCG
TTGATGGGAG CCGAAGTGCG CGCACTTGCC GATGCTCGCA TCCAGCTCAT TTCCGGCTCG
AGCAAGGCTC AAGCGGCCCT TTCTCAGGTT CCCCCCGCAC TCCGCGCCGA TCCCGGCCTT
CTGTATGATC AGGTTCGGTA TGAACGCCGC AGGGGTAACG ACCATACGGC CTTGCCGCTG
CTCCTTACCG CACCGACCGA ACCTCACAAG ATGGTCCGGC CCGACAGCTG GTGGGTCGAG
CGCAAAATTC TCGCCCGCAA GGCCATGTCG GATGGCCTCT ATGCCGAGGC TTACAAGATT
TCCGCAGGCA GCGGTCTTAC CGAAGGCGTG GGTTTCGCGG AAGCGGAATT CATGGCCGGC
TGGCTCGCGC TTCAATATCT GAACAAGGCG GACACCGCAC TTGCTCACTT CAAAAAGCTG
GGCGCGGGCG TGTCCACGCC GATCAGCAAA TCACGCGCCG AGTATTGGTC CGGCCGGGCC
GCATCTGCTG CGGGACGTAA AGATGAAGCA ACCGCCTACT ACCGTGCCGC AGCCGCTTAT
CCCACCACCT TCTATGGGCA GCTCGCCACG GCCGCTCTCG GCTCCACGGG CGGCGACGGC
AAGCTTCGCC TACCGAACGA CCCGGCACAT TCCGCCGATG CCAAAACGCG CTTTGCAAAA
CGCGAGCTGG TCCATGTTGC GAACATCCTG CAGGATCTCG ATCGGCAACA GCAGCGCTGG
GTCTTCATGT TGCATCTCGC AGACATCATC GATGATCCCG AGGAACTGGC CGCCCTGTCC
GAAATGGCCC TGAAGTCCGG CGATCAGAAA CTCTCGCTCC GCATGGCAAA GGCCACATCG
CTCCGCAACA TTGTATTGCC TGGCTATGCC TACCCGACGG CTGCAATGCC GCAATGGACA
CACAGGGGGC CGCCCGTCGA AAAGGCGCTG GTTTATGGTC TTTCGCGTCA GGAAAGCGAG
TTCGATCCTC AGGCGCTGAG CCCGGCGGGT GCTCGCGGCA TCATGCAGCT TATGCCGACG
ACGGCACGCA TGGTGGCAAA GCAGGTCGGC CTTCCCTATT CTCCGGCCAA GCTTACCGAT
CCCGTCTACA ACGCCACCCT TGGCGCCGCC CATCTCGGCG ATCTTGTAGA GAACGAGTTC
GGTGGCTCCT ACATCATGAG CATTGCCGCC TACAACGCCG GCTCCTCTCG TGTACGCCAA
TGGGTCACCC AATATGGCGA CCCGCGCTCG ACCGCTGTTG ATCCCATCGA CTGGATCGAG
AGCATTCCCT TCTCCGAGAC ACGCAACTAC GTGCAACGTG TCATCGAGAA CATGGAAGTT
TACCGCAGCC GCCTGAGCGG CGATGTCGAA CCCGTCCGTA TCGACGAGGA CTTGCGTCGT
CATACCGGCG CACCGATCTC GACTCCGGCG CCCACACCAC GCCTGACCAA TGTTCCCCTC
GCGCCTCCTT CCGCAGCGCC AGCCATGACC ACACCCGCCG CGAATGCACC CGCCCCGGTC
GCACCACCTG GCTCCGTGAG GATGGCACCT GTTGTCGAAG CGGAAGATGG GCGCGCGTCG
ACTACGGTTC GTTAA
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| Protein sequence | MLRGLSHRAV RCGSGDPEAL HQEKPRADRE LRIFRVLQVG YSSRLSYFPV LAALVAASFA
LCAEAGASTL PIPRPDAGDP PARLSVVSSA PTAAATPGNT LSRLGAAELA ALRNALSEAD
RGNWSAASRH MAGVSDPAAI KLVTWTRLIA DSSNATFAEL VAFREQNHDW PRRHVLALRA
ETALLSYPMS ADDVIAWFSA NPPQTGEGRI RYGKTLVEAG REKEGAEWIR KAWIENDFST
RRQQEILKSF GKYLTADAQQ SRLARLLWEQ RTGDAQTTAA LMGAEVRALA DARIQLISGS
SKAQAALSQV PPALRADPGL LYDQVRYERR RGNDHTALPL LLTAPTEPHK MVRPDSWWVE
RKILARKAMS DGLYAEAYKI SAGSGLTEGV GFAEAEFMAG WLALQYLNKA DTALAHFKKL
GAGVSTPISK SRAEYWSGRA ASAAGRKDEA TAYYRAAAAY PTTFYGQLAT AALGSTGGDG
KLRLPNDPAH SADAKTRFAK RELVHVANIL QDLDRQQQRW VFMLHLADII DDPEELAALS
EMALKSGDQK LSLRMAKATS LRNIVLPGYA YPTAAMPQWT HRGPPVEKAL VYGLSRQESE
FDPQALSPAG ARGIMQLMPT TARMVAKQVG LPYSPAKLTD PVYNATLGAA HLGDLVENEF
GGSYIMSIAA YNAGSSRVRQ WVTQYGDPRS TAVDPIDWIE SIPFSETRNY VQRVIENMEV
YRSRLSGDVE PVRIDEDLRR HTGAPISTPA PTPRLTNVPL APPSAAPAMT TPAANAPAPV
APPGSVRMAP VVEAEDGRAS TTVR
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