| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2431 |
|---|
| Symbol | |
|---|
| ID | 5454222 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 2627116 |
|---|
| End bp | 2628789 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640878007 |
|---|
| Product | DNA repair protein RecN |
|---|
| Protein accession | YP_001413697 |
|---|
| Protein GI | 154252873 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0497] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00634] DNA repair protein RecN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.320289 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 61 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGCCG CGCTGTCGAT CCGCGATATC GTCCTTATTG ACCGGCTGGA ACTGGCGCTC
GACAAGGGCC TGTGCACACT CACGGGCGAA ACGGGTGCCG GCAAGTCCAT CCTTCTCGAC
GCGCTCGGCC TTGCGCTCGG CGCGCGGGCC GATGCAGGCC TTGTGCGGCA AGGGGCGGAG
CAGGGCAGCG TCACGGCCGT CTTCGACATT GCGCCCGCGC ATCCGGCGCG AACTCTCCTC
GCCGAAAACG ATCTTGAAGC CGAAGGCGAT CTCATTCTTC GCCGCGTGCA GACGCGCGAC
GGCCGCTCGC GGGCCTTCGT CAACGACCAG CCGGTAAGCA TCGGGTTATT GCGGCAGCTC
GGCGATGCGC TGGTCGAAGT GCATGGCCAG CATGATGAGC GCGGGCTGCT CGATGCATCC
GGCCACCGCG CGATCCTCGA TGCCTTTGGC GGGCTGGAAG CCGATGTCTC GAAGGCGCGG
CGGCTCTGGG CGGCTGCGAC GGAGGCGCGG GATGCGCTCG CCGCCCATGA AGCGATGCTG
GCGCGGGCGA AAGCCGAGCA GGATTATCTC ACCCATGTCG TCGCCGAGCT GGACGAGCTG
CAGCCGGTGG CGGGCGAGGA AACGGCGCTT GCCGAAGAGC GCACGCTGAT GATGCATTCG
GAAAAGATCG CGGGCGATCT CGCTGAGGCG GAAGAGGCGC TGTCGGGCGA TGGCGGGCTC
GATGCGCGCC TCACCGTGGC GCTGCGCCGT CTTGCCCGTG TGGCGGAGCA GGCGGGCGGC
CGGCTCGACG GCGCCATTGC CGCCCTCGAC CGGACGCTGA ACGAAGCGGC GGAAGCGCGC
GACCAGGTGG CGCTTGCGAT GCGGGCGCTG GAGTTCGATC CGCGCCGCCT CGAACAGGCG
GAGACGCGGC TCTTCGCGCT TCGCGCCGCC GCGCGCAAAC ATAATGTCGC GGTGGACAAT
CTCGCCGAGC TTGCGGACAA GCTGCGCGGG CAGCTTGCCG AAATCGAGGG CGGCGAGGCG
ACGCTTGCGC GGCTGCGCAA ATCCGCCGAT GAGGCAGCCG CGGCCTACAG GGCTCATGCG
CAAGTGCTGT CCGCCGCGCG CGCAAAGGCG GCGGCGAAGC TCGACAAGGA AGTGATGAAG
GAGCTGAAGC CGCTCAAGCT CGACAAGGCG ACTTTCAAGA CGCAGATGGA CGTTCTCCCC
GAGGGGCAGG GCGGACCGGA CGGCATCGAC CGCGTCTCCT TCCTCATTTC GACAAATCCC
GGCGCGCCGC TCGGGCCGCT CATCAAGATC GCGTCGGGCG GCGAGCTTTC GCGCTTCGTG
CTGGCGCTGA AGGTTGCGCT TGCCTCGCGC GGCAGCGCGC CGACACTGAT TTTCGACGAA
GTGGATTCAG GTGTCGGCGG CGCGGTGGCG GAAGCCGTCG GCCTGCGGCT CGCGGAACTC
GCCAGGATGG CACAGGTTGT CGTCGTCACC CATTCGCCGC AGGTCGCCGC CCGCGCGCAG
CATCATTTCC GCATCTCAAA GGGCGGCGAG GCGAAAGCGG CAAAGGTGGC GACGCGGGTC
GAGACGCTGG ACGCACCGGC GCGGCGCGAG GAAATCGCGC GTATGCTCGC CGGCGCAACG
GTAACGGATG AAGCGCGCGC CGCCGCAGAC AGGCTGATCG GCAGCCATCC GTGA
|
|---|
| Protein sequence | MLAALSIRDI VLIDRLELAL DKGLCTLTGE TGAGKSILLD ALGLALGARA DAGLVRQGAE
QGSVTAVFDI APAHPARTLL AENDLEAEGD LILRRVQTRD GRSRAFVNDQ PVSIGLLRQL
GDALVEVHGQ HDERGLLDAS GHRAILDAFG GLEADVSKAR RLWAAATEAR DALAAHEAML
ARAKAEQDYL THVVAELDEL QPVAGEETAL AEERTLMMHS EKIAGDLAEA EEALSGDGGL
DARLTVALRR LARVAEQAGG RLDGAIAALD RTLNEAAEAR DQVALAMRAL EFDPRRLEQA
ETRLFALRAA ARKHNVAVDN LAELADKLRG QLAEIEGGEA TLARLRKSAD EAAAAYRAHA
QVLSAARAKA AAKLDKEVMK ELKPLKLDKA TFKTQMDVLP EGQGGPDGID RVSFLISTNP
GAPLGPLIKI ASGGELSRFV LALKVALASR GSAPTLIFDE VDSGVGGAVA EAVGLRLAEL
ARMAQVVVVT HSPQVAARAQ HHFRISKGGE AKAAKVATRV ETLDAPARRE EIARMLAGAT
VTDEARAAAD RLIGSHP
|
|---|
| |