Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2325 |
Symbol | |
ID | 5455265 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 2498450 |
End bp | 2503798 |
Gene Length | 5349 bp |
Protein Length | 1782 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640877905 |
Product | outer membrane autotransporter |
Protein accession | YP_001413596 |
Protein GI | 154252772 |
COG category | [S] Function unknown |
COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain [TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0522858 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.00737544 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGGCGTGG CAAGCGGAAA TCGGGTAGCG ACAGGGCGGC GCACCATGCG TGTAACCACT TGGCGCTTCA TGCGTCTGCG GCGCAAGGCT GTGCCACCCG TCATCCTCCG ACGCAATCTG ACGCGGCGTC TCCTCTCCAG CGTCGGCGTT GCCGCCCTTC TCGCGGGTGT TAGCCTCGCG CTTCTTCCAG CCCCCACCCG CGCGGATACC TCATGGACGG GCGCTGCCGA CAGCGACTGG AACAACGCAG CCAACTGGTC AAACGGTCTG CCGGTCAACA CTTCGGGAAC GACGAAGATC GAAGGGCCGG TCGCCGCGAC TGTCGATGGT GTCAGTGTGG CGGACTCTGG CCGCACCAAT ATCGGCTCCG CCGCGCAGGA CGGTTCGCTC ATCGTGCAGG GCGGCGGTAC GCTGAATGCG GGTGTATTTG AGCTCTTCGG ATATAATGGC TTCAGCGGTA CCGCAACCAT CCGTGGCGCC GGGTCCGGGA TATCCACTTC GTCGAGCCTC TTTGTCGGCG CCTACACGGG CGTCGGCCAT ATCTTCATCG AGGACGGCGG AACGCTGACC ACCCCCTATT CTACATATAT GAGCCAGTAT AACGGCTCGC TCGGTACCGT AACGGTGACT GGTTCAGGTT CGACCTGGAA CAGTAACTAT GAGATCAATC TCGGCGGTGC CGAAGGCAAT TACGACGCGA CGGGTATCCT GACGATCGCG GATGACGGCC TGGTCAACAT AAACAATGGC AACAGGAATC TGAATGTCGC CAAATCGACC GGCTCCACCG GCACGCTGAA TATCGGCGCG GCGGAAGGCG ATGCCGCCGT CGCGGCGGGA TCGTTGCAGG CAAAGAGTGT TGTGTTCGGG GCGGGCGACG GTACGCTCGT CTTCAATCAT ACGGAAACGG ATTACACCTT CGCTCCGTCC ATCTCGGGCA ATGGCGGCGT ACATCAGCTC GCGGGCACCA CCAACCTCTC CGGATCGAAT AGCTGGTCGG GAAGCACTCT GGTCGAAGGC GGTATTCTGC GCGCGGGCGC GGCGGGCGCT CTTTCCGCCA ACGCCGCCTA CACGGTCAAT GGCGGTACGC TCGATCTCAA CGATTTCGAC CTCACCGCAA CCGAACTCTC GGGCACGGGC GGAACGGTCG ATCTCGGGAC CGCCGAACTC GAAGTCGACC AGGACGGCGA CTCCGTTTTC GATGGCCTCA TCGCGGGTGC GGGCAGTCTG GTGAAGCTCG GTTCCGGCAT CCTCTCGCTG ACCGGCGCGA ACACCTATTC CGGCGGCACA ACGCTCGGCG AGGGTACGCT CCGCCTCGAA GACGACGATG CCATTGGCAC CGGCGCACTC ACCGTCACCG GCGGCACCCT CGACTATGAT GACGGCATCG ACCTGTCGAA CGACATCGAC TTGCGGGCGC AGGCGACCCT CAACGTCACC ACCGGCTCCG CCACCCAGTC CGGCAATATC GGCGAGACGG GCGGCAGCTT CGGTATCGTG AAGTCCGGCG CGGGCATCCT CTCGCTCACC GGCGCGAACA CCTACACAGG CACCACCACT GTTTCCGGCG GCACGCTGCG TGCCGGCAGT GCCGACGCTC TCGTCTCCGG CGCCTACATC TTGAACGGCG GTACCCTCGA CCTCAATGAC TTCGATCTTT CCGCCTCCGG ACTTTCCGGT GCAAGCGGTA CCGTCGATCT CGGCAGCGCC GAACTCGAAG TCGATCAGGA CAGCGACGGG GTCTTCGGCG GCATCATCTC GGGCGCGGGA AGCCTCCTGA AGCTCGGCTC CGGTATGCTC ACCCTCACGG GCGGGAGCAC CTATACGGGC CTCACCACCA TACGTGAGGG GACGCTTGCT CTCGACGGCG GCTCTGTGGA GTCGTCCGAC GACGTCATCA TCGGAGATCT GGCCCATACG GTGGGTGAAG TCACGGTGAC TGGTGCGGGA GCCTCGCTCG ACACCGACAG CAGTGTGCTT GTCGGAGAGC TCGGTGAGGG AACACTGAAC GTCGAAAATG GCGGCGTTGT GACGGCCGAT GTTGTCATTG CCGGGCATCT TTCGGGTTCG GACGGAGCGA TCCGTGTCAC CGGAACCGGA TCGCAGGTCA ACAGCACCAG CTTGCTTCGG ATTGGCGATG AGGGCGTCGG GCGCCTGATC GTGTCTGAAG GTGGCGCCGT GACGAATACA AGCACAGGCT ATATCGGCGC AGGCACGAAT GGTGAGGGCG CCATGACTGT CACCGGCACA GGATCGAAAC TCGACAATTC CGGCATCCTC TATGTTGGCG GCGAGTACAA TGGCGCGATT GGTGTCCTGA CCGTTGCCGG CGAAGCCGCT GTCAATGTAG GGGCCGGCAG CGGCACAGTC CGTGTCGCGC ATCATTCCGG CGCCACCGGC ACCCTCAATA TCGGTGCGGC GGAAGGCGAT GCCGCCGTCG CGGCCGGCAC ACTGAATGCC GCCAGCCTGC AATTTGGTGC GGGTACCGGT CAGATTGTCT TCAATCATCT CGACGATGAC CATGCCTTCT CCAGCGATGT TTCCGGCGCC GGCGAAGTGC TTCATCTTTC CGGCACCACC ATCCTGACCG GCGAGAACAC CTATACCGGC GGCACCACCG TTTCGGGCGG CACGCTCCGC GCGGGCCGCG TCGGCGCATT CACCTCCGGC GGCTACGAAG TGAATGGTGG CACGCTCGAC CTCAACGATT TCGACCTTTC CATGTCCGAG CTCTCCGGCA TCGGCGGTGC CGTCGATCTC GGCAGCGCGG CGCTCGCGGT CGGCAGCGGC AACACGGACG CGAATTTTGC GGGCGTGATC TCAGGTATCG GCAGCCTCGA AAAGACGGGC CTGGGTTCCT TCACCCTCGC CGGCGCGAAC AGCTACACTG GCGGCACGAC GGTTTCGGGC GGCACGCTGC GCGCGGGCGC CGCGTCGGCC TTCGTCGACG GCAGCGCCTA TACGGTCGAT GGCGGCACGC TCGACCTCAA CGATTTCGAT CTTTCCATGT CCGAGTTGTC GGGCACCGGC GGCACGATCG ATCTCGGCGG CGCGACGCTT ACCGTCGGCA GCGGCAACAC GTTCACGAAC TTCGCGGGCG CGATCGAAGG AACGGGCGGT CTCGAAAAGA CGGGAACGGG AGAACTGACG CTGACCGGCG CGAACAGCTA CACCGGCGGC ACGACGATTT CCGGTGGTAC GCTCGAAGGC AGCACGTCGA GCCTCGTCGG CGATATCGTG AACAATGCCA CGCTCGCCTT CACGCAGGCA TTCGACGGCA CGTTCGGCGG CGTCATATCT GGCACGGGCA GTCTCGTGAA GTCCGGTTCC GGCGTTCTGA CCCTGACCGG CGCGAATAGC TGGTCAGGCG GTACGACGAT CCGGCACGGC ACGCTCGAAG GCAGCACGTC GAGCCTCACC GGCGACATCG TCAACGACGC GGCGCTTGTC TTCGCGCAGG CGGGCGACGG CACCTATGCG GGCGCGGTCT CGGGCACCGG CAGCCTCGAG AAGACCGGCG CGGGCACGCT CACGCTCACC GGCGCGAACG GCTACACCGG CGGCACCACG GTTTCCGGCG GTACGCTCGC GGGCAACACG TCGAGCCTTC AGGGTGACAT CGTCAACAAT GCGAGCCTCC TCTTCGACCA GTCGGCGGAC GGCACCTATG CGGGCGTCCT GTCCGGCAAC GGCGACATCG TGAAGTCCGG CGCGGGGAGC CTCGTCCTCT CCGGCATCAG CGGCGCCTTC ACGGGCGGCC TGGAGGTGCT GTCGGGCAGC CTCGTCGTCG ACGGCACCTT CGGGGGCGGC CTTCTCGTCT CGGGCGGCTT CCTCGGCGGT TCGGGCACGG TCGGCAGCAC CACGCTCGGC GGCGGCGCGA CGCTCGCGGC GGGCAATTCG ATCGGCACGC TCACCGTCGC GGGCGATCTC GCCTTCTCTG CCGGTTCTGT CCTCGCGGTC GAGGTGAATG ACGGCGGCGA CGCCGCGGGC GTCAATGCCG ATTTCGTCCA TGTGACGGGC GCGGCGACGA TCGCGAGCGG CGCGGTCGTC GAGGTCGCGC CGGCGAACGG CACGGATGAC GGCATCACCT ATGCGCCCTC CACCACCTAC CGGATCCTCA CCGCCGATGG CGGCATCAGC GGCGTCTTCG ACGGCGTCAC GGCGGGCTTC GCCTTCCTCA TGCCGGAAGT CTCCTACGAC GCCACCAACG TCTTCCTCAT CCTCACGCAG ATGGCGGCCT TCGAGGATGT GGCGTCGACG CCGAACCAGC AGGGCGTCGC GGCCGCGGCC GAGGCGCTCG GCGCCGGTAA CCCCCTCTAT GACGAGATCA TCGGCATGTC GGAGGAAGAG GCGCAAGCGG CCTTCGACGC GCTCTCGGGC GAGGCGCATG CAAGCTCGAC CGGCGTCTTT TCCAGCTCCG CCGGGATCGT CCGGCGGACG ATCTTCTCCC GTCTCTTCTC GCGCTTCGGC GCGCCGCGCG GCTTCGCGGC GGCGGAAGGC TATGTGCCGG CGGCGGGCGA CGAGACGCCG CATGGCTATA CGGTATGGGG AGAACTCGTC CGCGGCTGGG GCGAGACGGA CGGGTCGGTG TCGGCGGCGG GCATCGAGCG CAATTCGACC GGCTTCCTCG GCGGCGTTGA TCGCGAGATC GGCGAGGCAA GCCGCATCGG TATCGCGCTC GGCTACAGCC ATGCCACCTT TGACGTCTCG GGGCGCGCCT CCTCGGGCGA AAGCGACAAC TTCCATGTCG CGGGCTATGC GGGAACCGAA CTCGGTCCCA TGGACCTGAA GGGCGTCCTC GGTTACAGCT ACCAGATGGC CGAAAGCCGC CGCCGTGTCG TCGTCGGCGG CGTCATCGAC GATCTCTCGG CGGACTACGG CGCCCACACC TTCCAGGCAT CGGGTGAGGC TTCCGTCGAT CTCGCAGCGG GTCCCGTCAC CCTGACGCCT TTCGCGGGCC TCGCCGTCGT TCATGTCGAG ACGGAAGCCT TCACCGAGAC GGGCGGGCCG TCGGCGCTTT CCATCGCCTC CTCCAGCAAC ACCACCGGCA TCTCTGAGCT CGGTCTGCGC GCCGCGCGCG AGGCGGGCTC CCTCACCCTT TTCGGCTCAG CCTCCTGGCG TCACGTTTTC GGCGATGTCG AGCCCCTTTC CCGCGCCTCT TTCGCAAGCT CGCCCGCTAC CACCTTTTCG GTTCGCGGCA CACCCCTCTC CGAGGACGTC GCCTCCATCG GCGGCGGGGT CGAACTTCTC ATCGCCGAGG AAACGACGCT CGAGTTTTCC TATCGCGGTG AATTCGCCTC CGACAGCCGC GACCATGGGC TGAAGGCGAA AGTTTCCATC CGCTTTTGA
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Protein sequence | MGVASGNRVA TGRRTMRVTT WRFMRLRRKA VPPVILRRNL TRRLLSSVGV AALLAGVSLA LLPAPTRADT SWTGAADSDW NNAANWSNGL PVNTSGTTKI EGPVAATVDG VSVADSGRTN IGSAAQDGSL IVQGGGTLNA GVFELFGYNG FSGTATIRGA GSGISTSSSL FVGAYTGVGH IFIEDGGTLT TPYSTYMSQY NGSLGTVTVT GSGSTWNSNY EINLGGAEGN YDATGILTIA DDGLVNINNG NRNLNVAKST GSTGTLNIGA AEGDAAVAAG SLQAKSVVFG AGDGTLVFNH TETDYTFAPS ISGNGGVHQL AGTTNLSGSN SWSGSTLVEG GILRAGAAGA LSANAAYTVN GGTLDLNDFD LTATELSGTG GTVDLGTAEL EVDQDGDSVF DGLIAGAGSL VKLGSGILSL TGANTYSGGT TLGEGTLRLE DDDAIGTGAL TVTGGTLDYD DGIDLSNDID LRAQATLNVT TGSATQSGNI GETGGSFGIV KSGAGILSLT GANTYTGTTT VSGGTLRAGS ADALVSGAYI LNGGTLDLND FDLSASGLSG ASGTVDLGSA ELEVDQDSDG VFGGIISGAG SLLKLGSGML TLTGGSTYTG LTTIREGTLA LDGGSVESSD DVIIGDLAHT VGEVTVTGAG ASLDTDSSVL VGELGEGTLN VENGGVVTAD VVIAGHLSGS DGAIRVTGTG SQVNSTSLLR IGDEGVGRLI VSEGGAVTNT STGYIGAGTN GEGAMTVTGT GSKLDNSGIL YVGGEYNGAI GVLTVAGEAA VNVGAGSGTV RVAHHSGATG TLNIGAAEGD AAVAAGTLNA ASLQFGAGTG QIVFNHLDDD HAFSSDVSGA GEVLHLSGTT ILTGENTYTG GTTVSGGTLR AGRVGAFTSG GYEVNGGTLD LNDFDLSMSE LSGIGGAVDL GSAALAVGSG NTDANFAGVI SGIGSLEKTG LGSFTLAGAN SYTGGTTVSG GTLRAGAASA FVDGSAYTVD GGTLDLNDFD LSMSELSGTG GTIDLGGATL TVGSGNTFTN FAGAIEGTGG LEKTGTGELT LTGANSYTGG TTISGGTLEG STSSLVGDIV NNATLAFTQA FDGTFGGVIS GTGSLVKSGS GVLTLTGANS WSGGTTIRHG TLEGSTSSLT GDIVNDAALV FAQAGDGTYA GAVSGTGSLE KTGAGTLTLT GANGYTGGTT VSGGTLAGNT SSLQGDIVNN ASLLFDQSAD GTYAGVLSGN GDIVKSGAGS LVLSGISGAF TGGLEVLSGS LVVDGTFGGG LLVSGGFLGG SGTVGSTTLG GGATLAAGNS IGTLTVAGDL AFSAGSVLAV EVNDGGDAAG VNADFVHVTG AATIASGAVV EVAPANGTDD GITYAPSTTY RILTADGGIS GVFDGVTAGF AFLMPEVSYD ATNVFLILTQ MAAFEDVAST PNQQGVAAAA EALGAGNPLY DEIIGMSEEE AQAAFDALSG EAHASSTGVF SSSAGIVRRT IFSRLFSRFG APRGFAAAEG YVPAAGDETP HGYTVWGELV RGWGETDGSV SAAGIERNST GFLGGVDREI GEASRIGIAL GYSHATFDVS GRASSGESDN FHVAGYAGTE LGPMDLKGVL GYSYQMAESR RRVVVGGVID DLSADYGAHT FQASGEASVD LAAGPVTLTP FAGLAVVHVE TEAFTETGGP SALSIASSSN TTGISELGLR AAREAGSLTL FGSASWRHVF GDVEPLSRAS FASSPATTFS VRGTPLSEDV ASIGGGVELL IAEETTLEFS YRGEFASDSR DHGLKAKVSI RF
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