| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1865 |
|---|
| Symbol | |
|---|
| ID | 5455734 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 2024507 |
|---|
| End bp | 2026624 |
|---|
| Gene Length | 2118 bp |
|---|
| Protein Length | 705 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640877444 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001413139 |
|---|
| Protein GI | 154252315 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGATCGC GGGTTTTCGG TATGGCGGCG CAGACGCGGC GCGGGCTTTT CATCGGCACA
TTGATGGGGG GCGTTTCGAT GGCCGCGCTG TGCGCGCTGC CCGCCATAGC GCAAGAAGAG
GCGGCCCAGG AAGAGGCGGC GCAGGCGGCG GCCGAAGAAG AGGCCGTGGA ACTCGCCCCG
GTTTTCGTGA CGGCATCGCC GCTGGCCACG CCGCTCGATG AACTCGCTAC GCCGGTGACG
GTGGTTTCGC GGGACGAGGT GCTGTCCTCG CCCGCCGCGA CCATCGGCGC GCTGCTGAAG
GACAAGCCCG GCATTACCGA AAGCTCGTTT GCGGCGGGCG CCAGCCGGCC GATCATTCGC
GGCCTCGACA ATACGCGGGT GCGCGTGCAG GAAAACGGCC TCGGCGCGGG CGATGTGTCG
GCGGTGAGCG AGGATCACGG CGTGCCGATC GATCCGCTTT CGGCGGAGCG CGTGGAAGTG
GTGCGCGGGC CGGCAACGCT GCGCTATGGC AGCGAGGCGA TCGGCGGCGT CGTCAACATC
ATCAACAACC GCATTCCGAC CGAGCTGCCG AAGGATGGCT TCGAGGGCGA GGCGTCGGTT
TCCTACGACA CGGTGAATGA CGGACGGCGC ATTTACGGCG AGATGAATGC GGGCGAGGGA
AATGTCGTGT TCCATCTCGA CAGCTTTGCG CGCAAGACGG ACGATTACCG CATTCCCGGC
GCGTTCGACC GGCAGACGAA TACATGGACG GAAACCTCCG GCATCGCGGG CGGCGCCTCC
GTTCTTCTCG ACGCGGACGC GTTCAGCGGA TATGCGGGCG CGGCCGTCAG CTATTACGAC
AGCAATTACG GTATACCGGC GGGCGACCCG CTCGACCCGA TCCATATCGA CATGTGGCAG
GCGAAGCTGC AGGTCGCGAG CGAACTCGAT TTCAATGGCG GGCCGTTCAG CAAGCTCGCG
CTGACCGGCG GCTACAGCGA TTATACGCAT GGCGAGATCG ACAGCGCAGG CGCGACGGGC
TCACGCTTCG ACAATGAGGA ATGGGAAGCG CGCGGCGAGC TGTCGCATCG CGCGGTTGGG
CCGTTCACCG GGGCCATCGG CATTCATGCG CGCGGGCGCC AGCTTGAAGC GGCGGGCGAA
GGCGGCGAGC TGATCGCGCC TTCGGATACG GACGCCATTG CCGGTTTCAT CTTCGAGGAG
ATGCCGCTTG CGGGCGAATG GTTCAAGCTG CAGGCATCGG GCCGCGCCGA ACATGTGAAT
GTGACGGGCA CGGCGCTTGA CACGGTGACG GCGCTCGAAT TCGACAGCGA GCGGAGCTTC
ACGCCGCTCA GCTTCGCGGC GGGGCTGGTG GCGAATGCGG GCAATGGCTG GGTGTTCGGC
CTCAATGCGC AGCGCGTGGA GCGGGCGCCG GATGCGCTGG AGCTTTATTC CAAGGGGCCT
CATGAAGCGA CGGAGACTTT CGAGATCGGC GATCCGACAC TCGACAAGGA GACCGCGCAG
ACCTTCGAGC TGACGGCCAA GCGCGTGGGC GATGATTATT CGTTCGAGGC GGCGGTGTTT
CACACGAAGT TCAGCGACTT CATATACAAG CGGCTGACCG GCATCACCTG CGACGATGAC
TTCGCTTCCT GCGGTGTGGG CACGGAACTC GACCAGGTGC TGTTCACGCA GGAGGACGCG
ACCTTCCGCG GACTGGAAGC GGCGGGCCGC GTGACGCTTG CACGGTGGGG CACGGCGAGG
GCCGGGCTCA GCGGCCAGTT CGACATGGTA CGCGCGGAGC TTGACGCGGG CGGCGACGTG
CCGCGCATTC CGCCGATGCG CGCGGGCGCT GGCGTCTTCT ATGCGGATGA GACCGTCGCC
GGCGAGTTCG GTTTCCTGCA TGCGTTCGAG CAGGACCGGA TTTCGGCGAA TGAGACGGAG
ACGGGAAGCT ATACGAACCT CAAGGGCGAA ATCCGCTATC TCGTGCCGTC CGTCATGGGC
GGAAACGCGG CGCTGGAATT CGCGCTGGTG GGCGAGAACC TGCTGGATGA GGACATCCGC
AACCATGTGT CGTTCAAGAA GAACGACGTG CTGCAGCCGG GACGTAATGT GCGGCTGGTG
GTGACGGCGC GGTTCTGA
|
|---|
| Protein sequence | MGSRVFGMAA QTRRGLFIGT LMGGVSMAAL CALPAIAQEE AAQEEAAQAA AEEEAVELAP
VFVTASPLAT PLDELATPVT VVSRDEVLSS PAATIGALLK DKPGITESSF AAGASRPIIR
GLDNTRVRVQ ENGLGAGDVS AVSEDHGVPI DPLSAERVEV VRGPATLRYG SEAIGGVVNI
INNRIPTELP KDGFEGEASV SYDTVNDGRR IYGEMNAGEG NVVFHLDSFA RKTDDYRIPG
AFDRQTNTWT ETSGIAGGAS VLLDADAFSG YAGAAVSYYD SNYGIPAGDP LDPIHIDMWQ
AKLQVASELD FNGGPFSKLA LTGGYSDYTH GEIDSAGATG SRFDNEEWEA RGELSHRAVG
PFTGAIGIHA RGRQLEAAGE GGELIAPSDT DAIAGFIFEE MPLAGEWFKL QASGRAEHVN
VTGTALDTVT ALEFDSERSF TPLSFAAGLV ANAGNGWVFG LNAQRVERAP DALELYSKGP
HEATETFEIG DPTLDKETAQ TFELTAKRVG DDYSFEAAVF HTKFSDFIYK RLTGITCDDD
FASCGVGTEL DQVLFTQEDA TFRGLEAAGR VTLARWGTAR AGLSGQFDMV RAELDAGGDV
PRIPPMRAGA GVFYADETVA GEFGFLHAFE QDRISANETE TGSYTNLKGE IRYLVPSVMG
GNAALEFALV GENLLDEDIR NHVSFKKNDV LQPGRNVRLV VTARF
|
|---|
| |