| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1840 |
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| Symbol | |
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| ID | 5453622 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1991511 |
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| End bp | 1992674 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640877419 |
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| Product | conjugal transfer protein TrbL |
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| Protein accession | YP_001413114 |
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| Protein GI | 154252290 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
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| TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.50791 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGATC TCGGCGTCAT CGACCGCTTT ATGGAAGCCT TCACGCAAGC AGTCGACAGC
GGCTTCGGGC TATTGCAGGG CGATGTCGCC TTCCTGACCG CGATATTGAT CGGTATCGAC
ATCACGCTGG CCGGTCTCTT CTGGGCGATG GAGGAGGGCA ATGTGCTCGG TCGCCTCCTG
CGGAAGGTGC TCTATGTCGG CGTCTTCGCA CTGATCCTGA ATAATTTCGC AGGCCTCGCC
GATATCATCT TCCGCTCCTT CGCAGGTCTC GGGCTTCGTG CGGCGGAGAA CGAACTCACC
GCCGACGATC TGCTCCGGCC GGGCTATCTC GCCGGCATCG GCTTCGAGGC GGCCTGGCCG
CTTCTGCAGC AGGCAGGCTC GCTGATGGGC TTCACAAGTT TCTTCAACCA TGCCGTCACC
ATCATCGTGC TGGTACTTGC CTGGACCGTC GTCATCGCCG CCTTTTTTAT TCTCGCGGTA
CAACTCTTCA TCACCATCAT AGAGTTCAAG CTGACGACGC TGGCGGGCTT TGTACTGGTG
CCCTTCGCGC TCTGGACCAA AACGGCGTTT CTGGCGGAGC GCGTGCTCGG CAATGTCGTC
GCCTCGGGCG TCAAGGTGAT GCTGCTCGCG GTCATCATCG GCATCGGTTC GGGCTTCTTC
ACCGATTTCG TGACGGCGCT TCAGGGCCGC GAGCCCAACC TCAACGACGC CATGGCACTG
GTGCTCGCCT CGCTCGCCTT ATTCGGTCTC GGTATCTTCG GGCCGGGCAT CGCGGCGGGT
CTCGTCTCCG GCGCGCCGCA GCTCGGCGCC GGCGCGGCGG TCGGCGCGAC CGGCGGCGTC
GCGGCTGGTG CGGCGCTTGC AGGCGGAGCC GCATTTGGCG CCGCGCGGAT AGGGGGTGGT
ACCGGACTTT CGGCACTTCG GGCCGGCACC GGCATGAGCA CCGCGACGGC AGGTGCATCG
GCGATGGGGT CTGCGGCGGG CATGGCCGCA TCATCCTCCG CCGGAATGTC TTCAAGCATG
GCGGCGGGCA CGCCCGACTG GGCGCGGCGT CTCCGCGCCG AGCAGCGCCG CCGCACCCAT
ACCCAGACCG CGATTCAGGC GATCCGCGAA GGCGACCGGC CGGGCGCCGG CGCCAATCCT
TCCTTCGATG ATGGGAGGTC CTGA
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| Protein sequence | MDDLGVIDRF MEAFTQAVDS GFGLLQGDVA FLTAILIGID ITLAGLFWAM EEGNVLGRLL
RKVLYVGVFA LILNNFAGLA DIIFRSFAGL GLRAAENELT ADDLLRPGYL AGIGFEAAWP
LLQQAGSLMG FTSFFNHAVT IIVLVLAWTV VIAAFFILAV QLFITIIEFK LTTLAGFVLV
PFALWTKTAF LAERVLGNVV ASGVKVMLLA VIIGIGSGFF TDFVTALQGR EPNLNDAMAL
VLASLALFGL GIFGPGIAAG LVSGAPQLGA GAAVGATGGV AAGAALAGGA AFGAARIGGG
TGLSALRAGT GMSTATAGAS AMGSAAGMAA SSSAGMSSSM AAGTPDWARR LRAEQRRRTH
TQTAIQAIRE GDRPGAGANP SFDDGRS
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